User: deni.ribicic

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Posts by deni.ribicic

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Answer: A: Deseq2: Time series experiment with 2 conditions and 5 time points
... Hi Stan, This is a bit late reply, but I am facing actually the same problem. So the answer is basically to separate your time-points and test each and every on certain condition? This seems to be tedious especially if you have a lot of time points! Cheers, Deni ...
written 10 days ago by deni.ribicic0
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Comment: C: Metagenomic shotgun sequence analysis- optimal approach
... Hi dago, Thanks for the reply. Actually I am interested in specific genes (i.e. hydrocarbon degrading genes). Now if I want to calculate taxa contribution to those genes how would you do it if not binning first? What I understand is that by creating bins you are gathering potential genes belongin ...
written 3 months ago by deni.ribicic0
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Metagenomic shotgun sequence analysis- optimal approach
... Hi Folks, I am relatively new to bioinformatics world, therefore having some issues to construct a workflow that would suit my needs. Hence, I would kindly ask for your opinion and advice. I have Illumina shotgun sequences of 5 metagenomes. I would like to end up with functional profile of all 5 sa ...
metagenomics workflow shotgun written 3 months ago by deni.ribicic0 • updated 3 months ago by dago2.0k

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