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Showing :
answers
4
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0
replies
1.3k
views
Answer:
A: Does anyone know what exactly 1/2 mean?
6.4 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
1
reply
2.2k
views
Answer:
A: How Hisat Works
6.4 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
1.3k
views
Answer:
A: How to know that required sequence has been extracted
6.4 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
1
reply
3.3k
views
Answer:
A: Are there maximum gap penalty scores in BWA-MEM?
6.4 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
2
replies
2.9k
views
Answer:
A: receive GC-content profile for a given window-size and splitting multi fasta fil
6.4 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
2.9k
views
Answer:
A: denovo assembly of unmapped reads
6.5 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
1
reply
5.5k
views
Answer:
A: Which package to use for RPKM/FPKM RNA-seq counts?
6.6 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
4
replies
13k
views
Answer:
A: Technical replicates in RNAseq
6.6 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
1.9k
views
Answer:
A: standalone BLAST parametes
6.6 years ago by
Matteo Schiavinato
★ 3.6k
4
votes
1
reply
2.2k
views
Answer:
A: Tophat multiple or unique mapping criteria
6.6 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
7.9k
views
Answer:
A: hisat2 parameters for paired end and single end reads from same samples
6.6 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
3.3k
views
Answer:
A: Rename the fasta entries in Unix or R
6.6 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
1.4k
views
Answer:
A: awesome cancer genomics
6.6 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
2.6k
views
Answer:
A: Locate short DNA sequence from fasta file
6.7 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
2.0k
views
Answer:
A: BAM Index Chunks
6.7 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
5.4k
views
Answer:
A: Python Regular Expressions to extract the transcript ID from lines of GTF file
6.7 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
2.9k
views
Answer:
A: How to count reads mapped to multiple loci?
6.7 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
1.6k
views
Answer:
A: To screen for a good aligner
6.7 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
3.6k
views
Answer:
A: calculate RPKM from read count and gff by galaxy
6.7 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
0
replies
1.4k
views
Answer:
A: Extracting string from every other line
6.8 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
11k
views
Answer:
A: Augustus gene prediction for non model organism
6.8 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
14k
views
Answer:
A: bowtie2-align died with signal 6 (ABRT) (core dumped)
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
4.9k
views
Answer:
A: Using samtools to find mutation
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
0
replies
4.8k
views
Answer:
A: bcftools merge is not merging ??
7.0 years ago by
Matteo Schiavinato
★ 3.6k
6
votes
1
reply
6.9k
views
Answer:
A: mismatch setting in bowtie2
7.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
2.0k
views
Answer:
A: "Spikey" RNA-Seq coverage
7.0 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
0
replies
6.7k
views
Answer:
A: Speed up Picard MarkDuplicates or any better software?
7.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
2.5k
views
Answer:
A: Variant calling from multiple sequencing runs for a single samples
7.0 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
1.6k
views
Answer:
A: genome features and sequence parsing
7.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
1.5k
views
Answer:
A: Fasta to gff with custom set of genes
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
0
replies
6.0k
views
Answer:
A: How can I only took the mapped ones from STAR ?
7.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
4.0k
views
Answer:
C: trimming reads in fastq file
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
35k
views
Answer:
C: how to select with unix a column by the column name in a txt files
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
2.1k
views
Answer:
A: Error in raw count file of .sam after alignment on GRCh38
7.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
4.0k
views
Answer:
A: Error running gffcompare
7.0 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
1.5k
views
Answer:
C: Arranging header in nr database via Python (Unable to input multiple files)
7.1 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
1.6k
views
Answer:
A: Extract fasta sequences from main list using a list of titles
7.1 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
2.2k
views
Answer:
C: Can anybody explain what this statement says we should not distinguish between a
7.1 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
1
reply
1.8k
views
Answer:
A: read.table function loss of columns in bed file
7.1 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
0
replies
2.7k
views
Answer:
A: deciding --max-depth for RNAseq variant calling
7.1 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
2.9k
views
Answer:
A: best way to interpret RNA-seq after counts and differential expression results?
7.1 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
2
replies
2.6k
views
Answer:
A: Extract SNPs within 5 bps distance apart
7.1 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
2.8k
views
Answer:
A: What are the compositional differences between Prokaryotes' gene/genome and Euka
7.1 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
1.3k
views
Answer:
A: large deletion detection in a haploid microbial eukaryote
7.1 years ago by
Matteo Schiavinato
★ 3.6k
2
votes
1
reply
2.1k
views
Answer:
A: What does benchmark method exactly mean?
7.2 years ago by
Matteo Schiavinato
★ 3.6k
3
votes
1
reply
2.9k
views
Answer:
A: VCF to binary files
7.2 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
1
reply
1.2k
views
Answer:
A: Analysis over single chromosome data
7.3 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
0
replies
1.4k
views
Answer:
A: Are there any tools which display SNPs inside each gene?
7.3 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
1
reply
2.5k
views
Answer:
A: How to exercise RPKM cut-off
7.3 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
0
replies
1.8k
views
Answer:
A: orthologue mapping using circos
7.3 years ago by
Matteo Schiavinato
★ 3.6k
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