User: Shervin Alaei

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Posts by Shervin Alaei

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Answer: A: Help with microarray annotation
... Hi, You should always look for the annotation file that usually comes with the utilized microarray platform. In your case, a quick search for example in GEO, yields the following page with related files, which I think can solve your problem: [Platform GPL21163][1] [1]: https://www.ncbi.nlm.nih.g ...
written 17 months ago by Shervin Alaei0
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Comment: C: How to deal with "one probe-multi transcripts" problem?
... Thank you for your response. Actually, I finally decided to consider the whole gene, because of the limitation that you mentioned. But my next problem was how to select among or combine those probes that target a gene, which in my case, my solution was to select the probe with most variant expressio ...
written 2.3 years ago by Shervin Alaei0
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How to deal with "one probe-multi transcripts" problem?
... Hello everybody, There are a couple of posts that talk about tackling the problem of mulit-probes targeting a single transcript/gene, and as I found, taking the medium or mean of the expression values would be a good solution. So that's OK, but my problem is that I have some probes that target seve ...
gene alignment microarray blast written 2.3 years ago by Shervin Alaei0 • updated 2.3 years ago by spacemorrissey200

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