User: ngs_new_user

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Posts by ngs_new_user

<prev • 5 results • page 1 of 1 • next >
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Error in repeatmodeler consensi file output
... Hello everyone, I am trying to analyze repeat sequences in a non model organism (insect) by using repeatmodeler and repeat masker. I first began by building repeat models using repeatmodeler by first creating a database of the species (species.DB) BuildDatabase -name species.DB -engine NCBI sp ...
repeat modeler repeat masker repeatmasker written 6 months ago by ngs_new_user0
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What tools to compare 3 sets of predicted protein (gene) sequences
... Hi Everyone, I have three draft genomes (non model organisms) of a species of insect. All three draft genomes represent the same species from three different geographical locations, where this insect behaves differently in all three regions. I have predicted gene sequences from all three and woul ...
gene prediction comparative genomics written 11 months ago by ngs_new_user0
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what edits to make on maker_opts to predict complete genes using MAKER
... Hi everyone, I am in the process of predicting genes from a non-model organism using the gene predicting software MAKER. I performed a first run of prediction using default parameters and noticed that some of the predicted genes are partially predicted (ie missing either the start or stop codon). I ...
maker_opts gene prediction complete genes maker written 21 months ago by ngs_new_user0 • updated 21 months ago by Philipp Bayer6.0k
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Error ensuing while running Augustus gene prediction using hints file
... Hello everyone, I am trying to predict genes for a eukaryotic non model organism using the gene predicting software augustus, with the help of a hintsfile. I followed the tutorial as it is explained on http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/augustus/docs/readme.rnaseq.html to cre ...
augustus software error gene prediction written 22 months ago by ngs_new_user0
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Variant calling: result interpretation of homozygous variants within a species
... Hi everyone, I have assembled the genome of a non-model organism - insect (de novo genome assembly) and performed read mapping to it. I am currently in the process of performing a variant analysis. For all the different variants detected (SNPs, InDels) the initial results shows that 98% of all the ...
variant calling homozygous variants written 2.3 years ago by ngs_new_user0

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