User: mariamari693693

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New User
Location:
Finland
Last seen:
1 year, 8 months ago
Joined:
2 years, 2 months ago
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m**************@gmail.com

Posts by mariamari693693

<prev • 5 results • page 1 of 1 • next >
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how SNPs were curated into the NHGRI GWAS catalog ?
... Hi, Can someone explains me what does the following sentence mean? " The SNPs used were curated into the NHGRI GWAS catalog (Welter et al. (2014)) and obtained through the UCSC Table Browser (Karolchik et al. (2004)) on September 12, 2014." from: (http://egg2.wustl.edu/roadmap/web_portal/tissue_s ...
gwas snp written 23 months ago by mariamari69369320
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compare motif enrichment across 3 different genomic regions
... I have 3 different groups of genomic regions, the same size (500bp) but different number of intervals (1000,1500,2000). I want to do motif enrichment and compare the results. I have run `ame` with 5000 random genomic regions as background (I used the same bg file for all runs). My question is that: ...
motif enrichment motif chip-seq written 23 months ago by mariamari69369320
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Comment: C: convert bed file to GRangeList object
... This does not provide expected list of granges output. ...
written 2.2 years ago by mariamari69369320 • updated 2.2 years ago by zx87546.5k
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convert bed file to GRangeList object
... I have a bed file as follow: chr1 100194350 100194710 ARID3A 1000 chr1 151430604 151430964 ARID3A 1000 chr1 20301327 20301687 ARID3A 1000 chr1 229267393 229267573 ARID3A 1000 chr1 8802108 8802375 ...
R written 2.2 years ago by mariamari69369320 • updated 8 days ago by bernatgel1.7k
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RNA-seq normalization issue
... I have two RNA-seq datasets. Both of them have been prepared in the same way. I have only normalized count data for both. I thought to simply merge and normalize them again (which means normalization of normalized values) and then performing a batch effect. Does anybody have any idea to share with m ...
rna-seq written 2.2 years ago by mariamari69369320

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