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Comment: Comment: Right way to call purecn with cnvkit?
2.0 years ago by markus.riester ▴ 550
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1.1k
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Comment: Comment: Right way to call purecn with cnvkit?
2.0 years ago by markus.riester ▴ 550
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578
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Answer: Answer: CNV calling on targeted sequencing. Filter based on distance to target?
2.0 years ago by markus.riester ▴ 550
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900
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Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
2.1 years ago by markus.riester ▴ 550
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900
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Answer: Answer: tumor fraction estimation for ctDNA panel sequecing data
2.1 years ago by markus.riester ▴ 550
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Answer: Answer: PureCN issue: having problems running a small example
2.4 years ago by markus.riester ▴ 550
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3.1k
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Comment: Comment: Relation between copy number log ratio and copy number
2.5 years ago by markus.riester ▴ 550
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3.1k
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Comment: Comment: Relation between copy number log ratio and copy number
2.5 years ago by markus.riester ▴ 550
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3.1k
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Comment: Comment: Relation between copy number log ratio and copy number
2.5 years ago by markus.riester ▴ 550
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1
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3.1k
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Answer: Answer: Relation between copy number log ratio and copy number
2.5 years ago by markus.riester ▴ 550
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1.1k
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Comment: C: PureCN mappingbiasfile and minimum number of NormalDB samples question
3.4 years ago by markus.riester ▴ 550
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962
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Answer: A: Not able to find barcode file for Spatial Transcriptomic data
3.4 years ago by markus.riester ▴ 550
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3.3k
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Comment: C: purecn with cnvkit
3.4 years ago by markus.riester ▴ 550
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1
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3.3k
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Comment: C: purecn with cnvkit
3.5 years ago by markus.riester ▴ 550
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3.3k
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Answer: A: purecn with cnvkit
3.5 years ago by markus.riester ▴ 550
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3.3k
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Comment: C: purecn with cnvkit
3.5 years ago by markus.riester ▴ 550
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1
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3.3k
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Answer: A: purecn with cnvkit
3.5 years ago by markus.riester ▴ 550
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1.2k
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Answer: A: TCGA capture kits
3.6 years ago by markus.riester ▴ 550
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2.3k
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Comment: C: PureCN prepare environment error
3.7 years ago by markus.riester ▴ 550
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1.1k
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Answer: A: PureCN mappingbiasfile and minimum number of NormalDB samples question
3.7 years ago by markus.riester ▴ 550
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1
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1.5k
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Comment: A: TCGA CNV data reformatting
3.8 years ago by markus.riester ▴ 550
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1
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1.5k
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Answer: A: TCGA CNV data reformatting
3.8 years ago by markus.riester ▴ 550
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1
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1.2k
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Comment: C: PureCN Coverage.R error
3.8 years ago by markus.riester ▴ 550
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1
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1.2k
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Comment: C: PureCN Coverage.R error
3.8 years ago by markus.riester ▴ 550
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2.3k
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Answer: A: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
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1
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2.3k
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Comment: C: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
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1
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2.3k
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Comment: C: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
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2
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2.3k
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Answer: A: PureCN prepare environment error
3.8 years ago by markus.riester ▴ 550
1
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1
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3.7k
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Answer: A: Somatic variant calling with/without matched normal sample (Mutect2)
4.1 years ago by markus.riester ▴ 550
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0
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1.4k
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Answer: A: estimate tumor purity from capture panel data using tumor-only mode
4.4 years ago by markus.riester ▴ 550
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0
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2.6k
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Comment: C: Filtering for individual allelic balance in multisample vcf using GATK4
4.5 years ago by markus.riester ▴ 550
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1
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2.6k
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Comment: C: Filtering for individual allelic balance in multisample vcf using GATK4
4.5 years ago by markus.riester ▴ 550
0
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1
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2.6k
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Comment: C: Filtering for individual allelic balance in multisample vcf using GATK4
4.5 years ago by markus.riester ▴ 550
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1
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1.6k
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Comment: A: Library size normalization during CNV calling from genomically doubled tumor tis
4.7 years ago by markus.riester ▴ 550
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1.6k
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Comment: C: Library size normalization during CNV calling from genomically doubled tumor tis
4.7 years ago by markus.riester ▴ 550
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1
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1.6k
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Comment: C: Library size normalization during CNV calling from genomically doubled tumor tis
4.7 years ago by markus.riester ▴ 550
0
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1
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1.6k
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Answer: A: Library size normalization during CNV calling from genomically doubled tumor tis
4.7 years ago by markus.riester ▴ 550
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2.8k
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Comment: C: How to use result of CNVkit to estimate purity by PureCN
4.7 years ago by markus.riester ▴ 550
1
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0
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955
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Answer: A: Effect size in power analysis when dealing with Poisson based variant caller
4.8 years ago by markus.riester ▴ 550
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2.8k
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Comment: C: How to use result of CNVkit to estimate purity by PureCN
4.9 years ago by markus.riester ▴ 550
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1
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2.8k
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Comment: C: How to use result of CNVkit to estimate purity by PureCN
4.9 years ago by markus.riester ▴ 550
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1
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3.7k
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Comment: C: Ploidy Correction In NGS cancer data (human)
4.9 years ago by markus.riester ▴ 550
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3.7k
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Comment: C: Ploidy Correction In NGS cancer data (human)
4.9 years ago by markus.riester ▴ 550
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1
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3.7k
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Comment: C: Ploidy Correction In NGS cancer data (human)
4.9 years ago by markus.riester ▴ 550
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2
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3.7k
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Answer: A: Ploidy Correction In NGS cancer data (human)
4.9 years ago by markus.riester ▴ 550
2
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1
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1.2k
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Answer: A: CNV Segmentation density - non-zero?
4.9 years ago by markus.riester ▴ 550
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2.2k
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Comment: C: Passing cnvkit output to pureCN to account for cellularity
5.0 years ago by markus.riester ▴ 550
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2.0k
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Comment: C: Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CN
5.0 years ago by markus.riester ▴ 550
2
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1
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2.0k
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Answer: A: Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CN
5.0 years ago by markus.riester ▴ 550
3
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1
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2.2k
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Answer: A: Passing cnvkit output to pureCN to account for cellularity
5.0 years ago by markus.riester ▴ 550
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