User: mare116

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mare1160
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Differential expression on Combat-adjusted FPKM
... I have RNA-seq for 62 samples from 4 groups sequenced in 2 known batches, with a clear batch-effect in the PCA. I've derived expression using FPKM, and I've used Combat on log2(FPKM + 1) values. This removes the batch effect successfully, but now I would like to analyze differential gene expression ...
differential expression rna-seq combat fpkm written 3.2 years ago by mare1160

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For Differential expression on Combat-adjusted FPKM

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