User: mms140130

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mms14013050
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m********@utdallas.edu

Posts by mms140130

<prev • 123 results • page 1 of 13 • next >
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Comment: C: covert the file to .ped file
... yes I use MAC,anyway I solved the .map issue ...
written 2 days ago by mms14013050
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Comment: C: covert the file to .ped file
... yes I'm trying to do association ...
written 2 days ago by mms14013050
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Comment: C: covert the file to .ped file
... I think the ped file is not complete as you said I don't know why? I followed your coding but still having this issue ...
written 2 days ago by mms14013050
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Comment: C: covert the file to .ped file
... after i solved the issue of .map, I got the following error A problem with line 1 in [ plinkv2.raw ] Expecting 2 + 2 * 199 = 400 columns, but found 392 what should I do here? ...
written 2 days ago by mms14013050
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Comment: C: covert the file to .ped file
... Thank you for your help but when I apply the following code to my data it gives me empty file head -1 plink.raw | sed 's/ \+/\n/g' | sed '1,2d' | awk '{print "0\t"$0"\t0\t0"}' > plink.map ...
written 2 days ago by mms14013050
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Comment: C: covert the file to .ped file
... it gave me the following error No file [data1pr3.fam] exists ...
written 3 days ago by mms14013050
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covert the file to .ped file
... I have the following data ID Affection rs3117294 rs2747453 rs2747454 rs2747457 rs3131888 D0024949 0 C_C A_G A_G A_A A_G D0024302 0 A_C A_A A_G A_A A_A D0023151 0 C_C A_G A_A A_A G_G D0022042 0 A_C A_A G_G A_A A_A D0021275 0 C_C A_G A_G A_A A_G D0021163 0 A_A A_A G_G A_A ...
R written 3 days ago by mms14013050 • updated 2 days ago by Kevin Blighe7.2k
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Comment: C: Methylation data duplicated for same gene
... For The A2ML1 I have cg27653134 and cg03490200 for A4GALT they are cg07393322 and cg09744051 ...
written 26 days ago by mms14013050
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Methylation data duplicated for same gene
... Hi, I downloaded Methylation data using package TCGA2STAT in R as follows methyl<- getTCGA(disease="BRCA", data.type="Methylation", type="27K") it has two outputs the methyl$dat which has the data head(methyl$dat[,1:3]) TCGA-01-0628-11A-01D-0383-05 TCGA-01-0630-11A-01D- ...
gene R written 4 weeks ago by mms14013050
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Comment: C: how to find snps within 1Kb from the gene
... Thanks for your comment it helped Can ask you what is the difference between snp 147.txt and 142common .txt which one should I choose ? ...
written 5 weeks ago by mms14013050

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Centurion 8 weeks ago, created 100 posts.
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