User: mms140130

gravatar for mms140130
mms14013060
Reputation:
60
Status:
Trusted
Location:
Last seen:
1 year, 9 months ago
Joined:
2 years, 11 months ago
Email:
m********@utdallas.edu

Posts by mms140130

<prev • 124 results • page 1 of 13 • next >
0
votes
1
answer
454
views
1
answer
Why there is 2 copy numbers for same patients for the same gene?
... I have the CNV downloaded from TCGA2STAT in R, for BRCA patients. The data looks as follows: gene TCGA-3C-AAAU TCGA-3C-AAAU A1BG 0.1302 0.0064 A2M 0.2586 0.0033 A2MP1 0.2586 0.0033 NAT1 0.2662 0.0034 The same patient has 2 different CNV values for the same gene, why? ...
cnv written 22 months ago by mms14013060 • updated 22 months ago by Emily_Ensembl19k
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... yes I use MAC,anyway I solved the .map issue ...
written 24 months ago by mms14013060
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... yes I'm trying to do association ...
written 24 months ago by mms14013060
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... I think the ped file is not complete as you said I don't know why? I followed your coding but still having this issue ...
written 24 months ago by mms14013060
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... after i solved the issue of .map, I got the following error A problem with line 1 in [ plinkv2.raw ] Expecting 2 + 2 * 199 = 400 columns, but found 392 what should I do here? ...
written 24 months ago by mms14013060
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... Thank you for your help but when I apply the following code to my data it gives me empty file head -1 plink.raw | sed 's/ \+/\n/g' | sed '1,2d' | awk '{print "0\t"$0"\t0\t0"}' > plink.map ...
written 24 months ago by mms14013060
0
votes
2
answers
1.9k
views
2
answers
Comment: C: covert the file to .ped file
... it gave me the following error No file [data1pr3.fam] exists ...
written 24 months ago by mms14013060
3
votes
2
answers
1.9k
views
2
answers
covert the file to .ped file
... I have the following data ID Affection rs3117294 rs2747453 rs2747454 rs2747457 rs3131888 D0024949 0 C_C A_G A_G A_A A_G D0024302 0 A_C A_A A_G A_A A_A D0023151 0 C_C A_G A_A A_A G_G D0022042 0 A_C A_A G_G A_A A_A D0021275 0 C_C A_G A_G A_A A_G D0021163 0 A_A A_A G_G A_A ...
R written 24 months ago by mms14013060 • updated 24 months ago by Kevin Blighe51k
0
votes
0
answers
722
views
0
answers
Comment: C: Methylation data duplicated for same gene
... For The A2ML1 I have cg27653134 and cg03490200 for A4GALT they are cg07393322 and cg09744051 ...
written 2.0 years ago by mms14013060
0
votes
0
answers
722
views
0
answers
Methylation data duplicated for same gene
... Hi, I downloaded Methylation data using package TCGA2STAT in R as follows methyl<- getTCGA(disease="BRCA", data.type="Methylation", type="27K") it has two outputs the methyl$dat which has the data head(methyl$dat[,1:3]) TCGA-01-0628-11A-01D-0383-05 TCGA-01-0630-11A-01D- ...
gene R written 2.1 years ago by mms14013060

Latest awards to mms140130

Popular Question 23 months ago, created a question with more than 1,000 views. For plot the rows of dataset in R
Centurion 2.1 years ago, created 100 posts.
Supporter 2.3 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1847 users visited in the last hour