User: mms140130

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mms14013050
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Posts by mms140130

<prev • 82 results • page 1 of 9 • next >
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copy number variation as a covariate in MatrixEQTL
... I want to add the copy number variation as a covariate in the model by MatrixEQTL, but I have 20,000 rows and 1069 columns, this won't work as the number rows is greater than the number of samples How can I fix that? ...
gene R snp written 1 day ago by mms14013050
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Comment: C: Cis- eQTL Question
... Thank you for your answer .. ...
written 2 days ago by mms14013050
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Comment: C: Cis- eQTL Question
... Thanks for your answer, but my advisor wants me to write my own code, so Im trying to think how to do that ?? ...
written 3 days ago by mms14013050
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Comment: C: Cis- eQTL Question
... well, I have used MatrixEQTL before but my advisor doesn't want me to use it , he wants me to write my own code !! ...
written 3 days ago by mms14013050
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Cis- eQTL Question
... I'm trying to do a cis eqtl analysis, so I have a linear regression where gene expression is the dependent variable and the snps are the independent variable , I have 20,000 genes with 1000 patients and 700,000 snps with 1000 patients , I need to reduce the dimension of the snps so I will choose the ...
gene snp written 3 days ago by mms14013050 • updated 3 days ago by andrew.j.skelton733.5k
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Comment: C: how to select certain columns in R
... I will look at my previous Questions and provide feedback ! Thank you.. ...
written 10 days ago by mms14013050
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Comment: C: how to select certain columns in R
... Thank you very much , that was really helpful :) ...
written 12 days ago by mms14013050
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how to select certain columns in R
... I have the following part of the data TCGA-3C-AAAU-01A-11D-A41E-01 TCGA-3C-AAAU-10A-01D-A41E-01 A1BG 0.1302 0.0064 A2M 0.2586 0.0033 A2MP1 0.2586 ...
R written 14 days ago by mms14013050 • updated 14 days ago by Devon Ryan68k
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how to analyze CNV "copy number variation" data
... Hello, I'm trying to use copy number variation data in a model so I have for example gene expression data and SNP data for breast cancer, which is one data point for each patient. the CNV data is different for each patient there are 23 chromosomes and several segment means, I downloaded the file f ...
gene R snp written 15 days ago by mms14013050
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how to do gene annotation
... Hello I have the following data about copy number variation for breast cancer (BRCA) and I want to do gene annotation according to the start , end locations, I downloaded the data from firebrowse here is part of the data Sample Chromosome Start End Num_Probes Segment_Mean TCGA-3C-AAAU-10 ...
gene R written 16 days ago by mms14013050 • updated 16 days ago by Samuel Brady190

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