User: aquaq

gravatar for aquaq
aquaq30
Reputation:
30
Status:
New User
Location:
Last seen:
2 months ago
Joined:
3 years, 11 months ago
Email:
j*******@gmail.com

Posts by aquaq

<prev • 29 results • page 1 of 3 • next >
0
votes
0
answers
183
views
0
answers
Comment: C: Visualization of protein structure in R (Shiny)
... Thanks, I will look into it! ...
written 9 weeks ago by aquaq30
0
votes
0
answers
183
views
0
answers
Comment: C: Visualization of protein structure in R (Shiny)
... Thank you both, I hoped to avoid messing around with JS, but these seem good. ...
written 9 weeks ago by aquaq30
0
votes
0
answers
183
views
0
answers
Comment: C: Visualization of protein structure in R (Shiny)
... Thank you for the answer. I have custom PDB files, I cannot just fetch unfortunately ...
written 9 weeks ago by aquaq30
2
votes
0
answers
183
views
7 follow
0
answers
Visualization of protein structure in R (Shiny)
... Hi All! I am creating a Shiny server and would like to show the user protein structures from PDB file. I tried to search for a package that is able to do that, but could not find one. bio3d can write the output to open by pymol and Rpdb have a visualization, but unfortunately it is not very good... ...
pdb R protein structure visualization rshiny written 9 weeks ago by aquaq30
0
votes
1
answer
205
views
1
answers
Answer: A: How to get all descendants of a GO-term OR how to identifiy if a GO-term is an a
... Finally I found: go_term.get_all_parents() would give me all parents with 'is a' relation, that is good enough for my purposes. ...
written 6 months ago by aquaq30
0
votes
1
answer
205
views
1
answer
How to get all descendants of a GO-term OR how to identifiy if a GO-term is an ancestor of another?
... Hi All, I am using goatools in python and I was wondering if there are any easy ways, without iteratively looping through the tree, to determine all the descendants of a GO term. Alternatively, is there a way to determine whether a GO-term is a descendant (of any level) of another GO-term? Thank y ...
goatools python go written 6 months ago by aquaq30
0
votes
2
answers
220
views
2
answers
Answer: A: how to retrieve the antibiotics resistance genes in the plasmid sequence
... What about using CARD? https://card.mcmaster.ca/ You can either BLAST against the database or use their Resistance gene identifier (Analyze menu). ...
written 8 months ago by aquaq30
1
vote
1
answer
220
views
1
answers
Comment: C: Download pnly latest sequences from GenBank
... Thank you, I would have never searched for this there :) You saved me a lot of time! ...
written 11 months ago by aquaq30
3
votes
1
answer
220
views
1
answer
Download pnly latest sequences from GenBank
... Hi All, I am developing a webserver that would run a pipeline at every update of GenBank. After every update, I would like to download only those sequences that were added during the last update. Is it possible to do programatically without downloading the whole database? If yes, how? Thank you fo ...
genbank written 11 months ago by aquaq30 • updated 11 months ago by Xylanaser60
0
votes
0
answers
175
views
0
answers
Downloading PhosphoSitePlus older versions
... Hi all, I would like to get a specific version of PhosphoSitePlus, but cannot find a link to older versions on the webpage (yes, I tried google as well). Do you know any method how to access those? I have written to the support team but has no idea how long does it take for them to answer a questio ...
ptm phosphosite version written 15 months ago by aquaq30

Latest awards to aquaq

Popular Question 2.7 years ago, created a question with more than 1,000 views. For How to merge paired-end reads from sam files?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1184 users visited in the last hour