User: eyonesi

gravatar for eyonesi
eyonesi0
Reputation:
0
Status:
New User
Last seen:
1 month ago
Joined:
1 year ago
Email:
e******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by eyonesi

<prev • 13 results • page 1 of 2 • next >
1
vote
1
answer
152
views
1
answer
trinity installation command
... Hi I am trying to install trinity protocol but I don’t know how I can write following command with my directories. export TRINITY_HOME=/path/to/trinity/installation/dir I am new in Linux, Please help me with the explanation of details of this command thankyou ...
rna-seq written 6 weeks ago by eyonesi0 • updated 6 weeks ago by Ram12k
0
votes
3
answers
1.9k
views
3
answers
Comment: C: Bimodal GC content
... Hello, dear thackl I was running a denovo rnaseq expriment on a plant.similarity, my fastq GC content result is bimodal. Is it possible for you to more explain about "the second peak corresponded to specific repeat class"? I think it is depended to existance of chloroplast genome, what is your idea? ...
written 11 weeks ago by eyonesi0
0
votes
1
answer
180
views
1
answers
Comment: C: How to interpret and trim this plots?
... thanks for your answer. Can I ignore all output even if it shows two peaks in gc content? with regards ...
written 11 weeks ago by eyonesi0
0
votes
1
answer
180
views
1
answer
How to interpret and trim this plots?
... hello everyone I am running denovo rnaseq experiment at quality control step. I can’t interpret and trim two plot duplication level and GC content at output of fastqc . I have read some articles that is not recommended to remove duplicates for differential expression analysis. I don’t know that ho ...
rna-seq written 11 weeks ago by eyonesi0 • updated 11 weeks ago by Michael Dondrup43k
1
vote
1
answer
210
views
1
answer
minimum hardware requirement for denovo RNAseq analysis
... Hi all Dear what are minimum hardware requirements (RAM, Hard Disk, CPU, Graphic Card) for denovo RNAseq analysis, when it is avaiable 32 Gb raw data, Trinity pipeline? ...
rna-seq written 6 months ago by eyonesi0 • updated 6 months ago by genomax39k
0
votes
1
answer
292
views
1
answers
Comment: C: to pool or not to pool
... dear WouterDeCoster thank you ...
written 8 months ago by eyonesi0
0
votes
1
answer
292
views
1
answers
Comment: A: to pool or not to pool
... exactly I asked about pooling extracted RNA from replicates of each treatments to create libraries. So which one is better ' pooling RNA or not pooling? and also if we pool the RNA, isn't it complicate the analysis and assembly in a de novo analysis? ...
written 8 months ago by eyonesi0
0
votes
1
answer
292
views
1
answers
Comment: A: to pool or not to pool
... thank you st.ph.n its OK I'm going to do DGE. but which method is preffered or is better? ...
written 8 months ago by eyonesi0
0
votes
1
answer
292
views
1
answer
to pool or not to pool
... Hi all in experimental design for de novo transcription analysis (de novo RNA seq analysis) which method is preferred' to pool or not to pool of replicates? thank you ...
rna-seq written 8 months ago by eyonesi0
0
votes
0
answers
280
views
0
answers
requirements for denovo rnaseq analysis
... Hi All Dear For analysis the rnaseq data without refrence genome (denovo) from a plant with genome size as equal as rice what hardware is need? In the other words, what is requirements of a pc for denovo rnaseq analysis? ...
rna-seq written 11 months ago by eyonesi0

Latest awards to eyonesi

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 665 users visited in the last hour