User: Zhilong Jia
Zhilong Jia • 1.2k
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a bioinformatician
Posts by Zhilong Jia
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... It seems https://github.com/CTTV, as shown in the NAR2016 paper (doi: 10.1093/nar/gkw1055), is unavailable on GitHub now. ...
written 27 days ago by
Zhilong Jia • 1.2k
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114
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... The duplicated rownames are not allowed in the object of `read.table` got actaully.
The main idea is use `dplyr::group_by`, which gets the duplicated column group-wisely and `dplyr::summarise_all(sum)`, which sums all values in group.
Example code as the following:
# rowname_duplicated is th ...
written 6 weeks ago by
Zhilong Jia • 1.2k
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2.5k
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Answer:
A: Flower plot in R ?
... The code is from http://www.cnblogs.com/xudongliang/p/7884667.html with a minor update. the R package `plotrix` is mainly used (ref this package to get parameter information).
flower_plot <- function(sample, value, start, a, b,
ellipse_col = rgb(135, 206, 235 ...
written 6 weeks ago by
Zhilong Jia • 1.2k
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941
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1
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... how did you install the R? via conda? ...
written 7 weeks ago by
Zhilong Jia • 1.2k
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125
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... Why are the intensities different for two different genes with the same color bead in lincs L1000 data? So that the expressions of two genes are Deconvoluted from the fluorescence intensity measured by Luminex scanners. See Figure 1B and reference 1.
![Figure 1AB][1]
Ref 1: [A Next Generation Conn ...
written 3 months ago by
Zhilong Jia • 1.2k
1
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2
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508
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2
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... https://www.biostars.org/p/178443/ ...
written 3 months ago by
Zhilong Jia • 1.2k
1
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1
answer
490
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1
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... It seems there are options for hg19 in the File section. See figure ![enter image description here][1] .
[1]: https://imgurl.org/temp/1801/80f8198d2a80f2db.png ...
written 3 months ago by
Zhilong Jia • 1.2k
0
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1
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580
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1
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... A related post: https://www.biostars.org/p/46060/ ...
written 5 months ago by
Zhilong Jia • 1.2k
1
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2
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443
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... Convert the PubChem IDs to CHEMBL IDs (In the `Output IDs` section, choose `Registry IDs` - `CHCMBL`.) via https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi
...
written 6 months ago by
Zhilong Jia • 1.2k
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472
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... As @Fabio indicated, "Actually, if possible you should align to the whole genome anyway, so that you avoid spurious alignments to your regions of off-target reads that may have been generated.", in which specific step, the `--intervals` should be used? Thank you. ...
written 7 months ago by
Zhilong Jia • 1.2k
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