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User: Zhilong Jia

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Zhilong Jia • 1.6k
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http://zhilongjia.gith...
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a bioinformatician

Posts by Zhilong Jia

<prev • 252 results • page 1 of 26 • next >
3
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Answer: A: how to use unix tools to convert VCF genotypes like '1|1' to this '2'
... `cat 1.vcf` id1 0|0 1|1 1|0 id2 0|0 1|1 1|0 ` sed -e 's/0|0/0/' -e 's/1|1/2/' -e 's/1|0/1/' -e 's/0|1/1/' 1.vcf` id1 0 2 1 id2 0 2 1 ...
written 7 hours ago by Zhilong Jia • 1.6k
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103
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Answer: A: Extract the rows which contains values greater than 0.
... 1.txt is your file `awk '$4>0 || $5>0 ' 1.txt` ...
written 28 days ago by Zhilong Jia • 1.6k
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Comment: C: Incomplete GWAS Catalog Data from makeCurrentGwascat() [R, gwascat]
... Package gwascat version 2.20.1 ...
written 6 weeks ago by Zhilong Jia • 1.6k
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Answer: A: Incomplete GWAS Catalog Data from makeCurrentGwascat() [R, gwascat]
... redo `cat1 <- makeCurrentGwascat()`. Probably due to the internet. `cat` is not a good variable name as there is a `cat` function in R. Mine ![result][1] : [1]: https://i.ibb.co/f9w4GRT/20210113172030.png ...
written 6 weeks ago by Zhilong Jia • 1.6k
0
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What is the difference between Structural variants and Structural Variation
... What is the difference between Structural variants and Structural Variation. Some article use Structural variants, while others use Structural Variation. Thank you. ...
structural variants structural variation written 6 weeks ago by Zhilong Jia • 1.6k • updated 6 weeks ago by Antonio R. Franco • 4.6k
2
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Answer: A: RNA-seq STAR genome mapping
... it seems you did not install [STAR][1]. what you used probably is [star][2]. [1]: https://github.com/alexdobin/STAR [2]: https://docs.zmanda.com/Star ...
written 6 months ago by Zhilong Jia • 1.6k
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Comment: C: Edit a Multifasta File Through awk
... No, just show the content of the files to clarify `1.txt` and `2.txt` . ...
written 9 months ago by Zhilong Jia • 1.6k
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Answer: A: Edit a Multifasta File Through awk
... `cat 1.txt` ``` TRINITY_DN10231_c0_g1_i1 UBQ5_TOBAC TRINITY_DN10231_c0_g1_i2 UBQ5_TOBAC ``` `cat 2.txt` ``` >TRINITY_DN10231_c0_g1_i1 len=1399 path=[0:0-908 1:909-912 2:913-1398] ATATATATATAT >TRINITY_DN10231_c0_g1_i2 len=1399 path=[0:0-908 1:909-912 2:913-1398] GGCGCGCGGAGAGA ...
written 9 months ago by Zhilong Jia • 1.6k
0
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304
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Tools to infer population structure and evolution from structural variation genotype data
... Are there tools to infer population structure and evolution from structural variation genotype data? Generally, [fastStructure][1] or other tools are designed for SNPs. Are inferring population structure and evolution from structural variation genotype data largely different from that from SNP gen ...
population structure structural variation written 19 months ago by Zhilong Jia • 1.6k • updated 17 months ago by Biostar ♦♦ 20
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Comment: C: Downloading Data From Mg-Rast
... http://api.metagenomics.anl.gov/metadata/export/mgp128 ref: http://api-ui.mg-rast.org/api.html#sample ...
written 2.6 years ago by Zhilong Jia • 1.6k

Latest awards to Zhilong Jia

Great Question 8 days ago, created a question with more than 5,000 views. For pathway analysis tools and KEGG gene sets from MSigDB
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How can we make this plot? (sequence logo)
Student 9 months ago, asked a question with at least 3 up-votes. For How To Generate Bed File Only Containing The Cds Region ?
Popular Question 10 months ago, created a question with more than 1,000 views. For Differential expression analysis for samples from peripheral blood
Popular Question 10 months ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Great Question 11 months ago, created a question with more than 5,000 views. For A list of Bioinformatics projects for volunteers
Great Question 11 months ago, created a question with more than 5,000 views. For A list of Bioinformatics projects for volunteers
Epic Question 11 months ago, created a question with more than 10,000 views. For how to plot multi pheatmap into one figure
Student 14 months ago, asked a question with at least 3 up-votes. For What Is The Gene'S Correlation With Phenotype In Detail Using The Gsea
Popular Question 15 months ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Scholar 15 months ago, created an answer that has been accepted. For A: Batch effect removal before merging microarray data sets
Commentator 17 months ago, created a comment with at least 3 up-votes. For C: pathfindR - Pathway Enrichment Analysis using Active Subnetworks
Popular Question 17 months ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How can we make this plot? (sequence logo)
Popular Question 23 months ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Popular Question 23 months ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Popular Question 2.1 years ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Popular Question 2.4 years ago, created a question with more than 1,000 views. For what does lowess smoothed line show in a MA plot
Popular Question 2.5 years ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Great Question 2.6 years ago, created a question with more than 5,000 views. For how to set the size of cell of heatmap.2 in R
Popular Question 2.7 years ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Popular Question 2.7 years ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Commentator 2.8 years ago, created a comment with at least 3 up-votes. For C: pathfindR - Pathway Enrichment Analysis using Active Subnetworks
Popular Question 2.9 years ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Great Question 3.0 years ago, created a question with more than 5,000 views. For how to set the size of cell of heatmap.2 in R
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