User: Zhilong Jia

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Zhilong Jia1.2k
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a bioinformatician

Posts by Zhilong Jia

<prev • 218 results • page 1 of 22 • next >
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Comment: C: Open Targets, identifying targets for drug development in the treatment of disea
... It seems https://github.com/CTTV, as shown in the NAR2016 paper (doi: 10.1093/nar/gkw1055), is unavailable on GitHub now. ...
written 27 days ago by Zhilong Jia1.2k
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Answer: A: how to sum up the columns to remove the duplicated row names in RSEM output?
... The duplicated rownames are not allowed in the object of `read.table` got actaully. The main idea is use `dplyr::group_by`, which gets the duplicated column group-wisely and `dplyr::summarise_all(sum)`, which sums all values in group. Example code as the following: # rowname_duplicated is th ...
written 6 weeks ago by Zhilong Jia1.2k
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Answer: A: Flower plot in R ?
... The code is from http://www.cnblogs.com/xudongliang/p/7884667.html with a minor update. the R package `plotrix` is mainly used (ref this package to get parameter information). flower_plot <- function(sample, value, start, a, b, ellipse_col = rgb(135, 206, 235 ...
written 6 weeks ago by Zhilong Jia1.2k
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Comment: C: Error in RStudioGD() : Shadow graphics device error: r error 4 (R code execut
... how did you install the R? via conda? ...
written 7 weeks ago by Zhilong Jia1.2k
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why are the intensities different for two different genes with the same color bead in lincs L1000 data
... Why are the intensities different for two different genes with the same color bead in lincs L1000 data? So that the expressions of two genes are Deconvoluted from the fluorescence intensity measured by Luminex scanners. See Figure 1B and reference 1. ![Figure 1AB][1] Ref 1: [A Next Generation Conn ...
luminex lincs l1000 written 3 months ago by Zhilong Jia1.2k
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Answer: A: Open Source Bioinformatics projects for beginners
... https://www.biostars.org/p/178443/ ...
written 3 months ago by Zhilong Jia1.2k
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Answer: A: Encode RNA-seq expression matrix
... It seems there are options for hg19 in the File section. See figure ![enter image description here][1] . [1]: https://imgurl.org/temp/1801/80f8198d2a80f2db.png ...
written 3 months ago by Zhilong Jia1.2k
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Answer: A: Writing PLINK PED and MAP files... Error: Could not open temporary file.
... A related post: https://www.biostars.org/p/46060/ ...
written 5 months ago by Zhilong Jia1.2k
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Answer: A: Converting between drug identifier formats
... Convert the PubChem IDs to CHEMBL IDs (In the `Output IDs` section, choose `Registry IDs` - `CHCMBL`.) via https://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange.cgi ...
written 6 months ago by Zhilong Jia1.2k
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Comment: C: what should be taken care of during the bioinformatic analysis for targeted rese
... As @Fabio indicated, "Actually, if possible you should align to the whole genome anyway, so that you avoid spurious alignments to your regions of off-target reads that may have been generated.", in which specific step, the `--intervals` should be used? Thank you. ...
written 7 months ago by Zhilong Jia1.2k

Latest awards to Zhilong Jia

Popular Question 6 days ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Great Question 6 weeks ago, created a question with more than 5,000 views. For how to set the size of cell of heatmap.2 in R
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How can we make this plot? (sequence logo)
Popular Question 8 weeks ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Popular Question 12 weeks ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Popular Question 3 months ago, created a question with more than 1,000 views. For which structure should be used for a drug (like fluvastatin) in chemoinformatics
Student 5 months ago, asked a question with at least 3 up-votes. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How can we make this plot? (sequence logo)
Popular Question 7 months ago, created a question with more than 1,000 views. For How to calculate connectivity score for a compound in connectivity map O2?
Popular Question 7 months ago, created a question with more than 1,000 views. For A list of Bioinformatics projects for volunteers
Popular Question 7 months ago, created a question with more than 1,000 views. For How to calculate connectivity score for a compound in connectivity map O2?
Popular Question 9 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Popular Question 10 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Popular Question 11 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Epic Question 11 months ago, created a question with more than 10,000 views. For how to set the size of cell of heatmap.2 in R
Popular Question 12 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Popular Question 14 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Great Question 19 months ago, created a question with more than 5,000 views. For how to set the size of cell of heatmap.2 in R
Popular Question 20 months ago, created a question with more than 1,000 views. For how to set the size of cell of heatmap.2 in R
Popular Question 20 months ago, created a question with more than 1,000 views. For Database for Chemical and Physical Properties of drugs or compounds
Popular Question 22 months ago, created a question with more than 1,000 views. For How To Generate Bed File Only Containing The Cds Region ?
Popular Question 22 months ago, created a question with more than 1,000 views. For how to set the size of cell of heatmap.2 in R
Popular Question 22 months ago, created a question with more than 1,000 views. For Why Are Almost All Protein Or Mrna Abundance Measures Transformed By Log?
Prophet 23 months ago, created a post with more than 20 followers. For A list of Bioinformatics projects for volunteers
Guru 23 months ago, received more than 100 upvotes.

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