User: stacy734

gravatar for stacy734
stacy73420
Reputation:
20
Status:
New User
Location:
Last seen:
1 month, 1 week ago
Joined:
1 year, 2 months ago
Email:
s*******@yahoo.com

Posts by stacy734

<prev • 12 results • page 1 of 2 • next >
0
votes
4
answers
188
views
4
answers
Comment: A: Binning fasta sequences by size?
... Thanks to you both! ...
written 5 weeks ago by stacy73420
10
votes
4
answers
188
views
6 follow
4
answers
Binning fasta sequences by size?
... Hi everyone, I have a large fasta file and need to bin it by size: everything 200 nt and up in one file, and everything 199 or smaller in another. I have found some useful scripts that will remove the smaller sequences, but they are discarded and I need to keep them in a separate file. Can anyone ...
fasta binning size written 5 weeks ago by stacy73420 • updated 5 weeks ago by Matt Shirley8.2k
0
votes
1
answer
331
views
1
answers
Comment: A: Exporting fasta from SQL
... Thank you very much! ...
written 6 months ago by stacy73420
0
votes
1
answer
331
views
1
answer
Exporting fasta from SQL
... Hi everyone, I have sequences stored in an SQL database, with the header stored in one field and the sequence (single line) in another. header1 GACTACGACT... header2 ATACGATCAT... I've been exporting sequences as a csv and running another process to put them in proper fasta format. ...
fasta format sql written 6 months ago by stacy73420
1
vote
3
answers
314
views
3
answers
Comment: A: Alphabetizing fasta sequence
... Thank you all! Stacy ...
written 8 months ago by stacy73420
10
votes
3
answers
314
views
5 follow
3
answers
Alphabetizing fasta sequence
... Hi everyone, Can someone suggest a method to sort a fasta file by alphabetical order of the sequence (not the defline)? Any advice will be appreciated. ...
fasta bioinformatics written 8 months ago by stacy73420
0
votes
1
answer
301
views
1
answers
Comment: A: Binning Illumina reads by subread?
... Thanks very much! Science marches on... Stacy ...
written 9 months ago by stacy73420
6
votes
1
answer
301
views
1
answer
Binning Illumina reads by subread?
... Hi everyone, I have a very large file of genomic sequence, and need to bin them by the presence or absence of a specific 20-mer. (Everything with the 20-mer in one file, everything without it in another). I tried using grep but the sequences are multi-line. Any suggestions will be appreciated. ...
fasta illumina binning next-gen written 9 months ago by stacy73420
0
votes
1
answer
318
views
1
answer
Does Minia discard singletons?
... Hi everyone, I am working with some Minia assemblies. These were run using the no-length-cutoff parameter. Normally I discard small contigs, but I like to see what comes out before i do. My question: when using the no-length-cutoff parameter, does Minia keep everything, even the singletons, read ...
minia written 12 months ago by stacy73420 • updated 5 months ago by Rayan Chikhi1.2k
0
votes
0
answers
513
views
0
answers
Comment: C: Question about k-mer genie output
... Thank you for the sane advice. I will proceed with multiple assemblies with different k-mers. ...
written 13 months ago by stacy73420

Latest awards to stacy734

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1819 users visited in the last hour