User: stacy734
stacy734 • 30
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Posts by stacy734
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... Hi Alex
Thank you for the very clear explanation, and for taking the time!
Stacy ...
written 11 weeks ago by
stacy734 • 30
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... Hi all,
I'm drawing a blank as to how to calculate the probability of a sequence of length N with some number of mismatches.
For example, a specific 50-mer will occur once in 4^50 ( or 1.267 E 30).
(ignoring reverse compliments for this example for clarity.)
What would it be if one mismatch were ...
written 11 weeks ago by
stacy734 • 30
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Comment:
A: Binning fasta sequences by size?
... Thanks to you both! ...
written 7 months ago by
stacy734 • 30
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6 follow
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... Hi everyone,
I have a large fasta file and need to bin it by size: everything 200 nt and up in one file, and everything 199 or smaller in another. I have found some useful scripts that will remove the smaller sequences, but they are discarded and I need to keep them in a separate file.
Can anyone ...
written 7 months ago by
stacy734 • 30
• updated
7 months ago by
Matt Shirley ♦ 8.5k
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Comment:
A: Exporting fasta from SQL
... Thank you very much!
...
written 12 months ago by
stacy734 • 30
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... Hi everyone,
I have sequences stored in an SQL database, with the header stored in one field and the sequence (single line) in another.
header1 GACTACGACT...
header2 ATACGATCAT...
I've been exporting sequences as a csv and running another process to put them in proper fasta format. ...
written 12 months ago by
stacy734 • 30
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Comment:
A: Alphabetizing fasta sequence
... Thank you all!
Stacy ...
written 14 months ago by
stacy734 • 30
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5 follow
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... Hi everyone,
Can someone suggest a method to sort a fasta file by alphabetical order of the sequence (not the defline)?
Any advice will be appreciated. ...
written 14 months ago by
stacy734 • 30
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... Thanks very much!
Science marches on...
Stacy ...
written 15 months ago by
stacy734 • 30
6
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436
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... Hi everyone,
I have a very large file of genomic sequence, and need to bin them by the presence or absence of a specific 20-mer. (Everything with the 20-mer in one file, everything without it in another). I tried using grep but the sequences are multi-line.
Any suggestions will be appreciated.
...
written 15 months ago by
stacy734 • 30
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