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Posts by steve.booth
Comment: C: GSVA enrichment score and heatmap
... Thanks so much Kevin, works perfectly for my data also. Best, Steve ...
... Hi there, I have just used GSVA to perform ssGSEA + LIMMA as follows: eDat_es <- gsva(eset, c2BroadSets, min.sz=10, max.sz=500, method="gsva", mx.diff=TRUE,verbose=FALSE)$es.obs design <- model.matrix(~ Macrophages.M1 + Age + Sex+ packyears +BMI, data = pDat_MR) fit <- lmFit(eDat_es, des ...
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