User: Fill

gravatar for Fill
Fill70
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70
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6 months, 3 weeks ago
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Posts by Fill

<prev • 21 results • page 1 of 3 • next >
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Comment: C: Biallelic inactivation detection
... Thank you for the answer. How to get phased VCF if I use Varscan? It it possible to get phased data from VCF after Varscan? Or I need to change my pipeline? ...
written 5 weeks ago by Fill70
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Biallelic inactivation detection
... Hello everyone, Is there any way to detect biallelic inactivation in certain genes? Thanks in advance! ...
genome gene rna-seq written 5 weeks ago by Fill70 • updated 5 weeks ago by Pierre Lindenbaum96k
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Comment: C: Cancer expression data sets
... Is there any information about responders and non-responders on TCGA? ...
written 3 months ago by Fill70
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Cancer expression data sets
... I'm looking for expression data sets for any type of cancer **with information about therapy results** (response and non-response data). Thanks in advance. ...
chip-seq rna-seq written 3 months ago by Fill70
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Comment: C: Error: could not find function "exptData"
... Just try to change your R version to earlier one ...
written 3 months ago by Fill70
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Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
... Could you give an example of Ensembl transripts to UniProt ids translation please? ...
written 3 months ago by Fill70
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Comment: C: downloading pheno data
... You have to write it by yourself. ...
written 3 months ago by Fill70
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Comment: C: What is the best tool for isoform function prediction?
... They used pretty old tools like HMMER, signalP, tmHMM and RNAMMER. I hope there is better tool for functional isoform analysis. And trinity doesn't analyze isoforms. ...
written 3 months ago by Fill70
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What is the best tool for isoform function prediction?
... Hi, there are many databases where are functional annotations only for genes. I want to make analysis of my RNA-seq data and identify exact **isoform** function (biological process and subcellular localization). Is there any instrument for that? Thanks in advance! ...
prediction rna-seq isoform written 4 months ago by Fill70 • updated 8 weeks ago by Biostar ♦♦ 20
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Comment: C: Detecting isoforms in raw counts (or FPKM) after htseq-count
... Yes, now I will try RSEM or MISO. Thanks! ...
written 4 months ago by Fill70

Latest awards to Fill

Supporter 4 months ago, voted at least 25 times.
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: Calculating FPKM after htseq-count
Appreciated 5 months ago, created a post with more than 5 votes. For A: Calculating FPKM after htseq-count
Scholar 5 months ago, created an answer that has been accepted. For A: Calculating FPKM after htseq-count
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Calculating FPKM after htseq-count

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