User: Fill

gravatar for Fill
Fill70
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70
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8 months, 3 weeks ago
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Posts by Fill

<prev • 23 results • page 1 of 3 • next >
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Comment: C: How to extract only TUMOR variants from vcf file?
... Thank you for respond, but the question is how to correct already exsiting vcf file with tumor and normal samples. ...
written 8 weeks ago by Fill70
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How to extract only TUMOR variants from vcf file?
... Hi everyone I have a vcf file with normal+tumor variants after varscan. I need only tumor variants, so I tryed to do > vcftools --vcf ... --out ... -c TUMOR but it doesn't work. I really appreciate any help Thanks in advance ...
vcf vcftools written 8 weeks ago by Fill70
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Comment: C: Biallelic inactivation detection
... Thank you for the answer. How to get phased VCF if I use Varscan? It it possible to get phased data from VCF after Varscan? Or I need to change my pipeline? ...
written 3 months ago by Fill70
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Biallelic inactivation detection
... Hello everyone, Is there any way to detect biallelic inactivation in certain genes? Thanks in advance! ...
genome gene rna-seq written 3 months ago by Fill70 • updated 3 months ago by Pierre Lindenbaum98k
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Comment: C: Cancer expression data sets
... Is there any information about responders and non-responders on TCGA? ...
written 5 months ago by Fill70
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Cancer expression data sets
... I'm looking for expression data sets for any type of cancer **with information about therapy results** (response and non-response data). Thanks in advance. ...
chip-seq rna-seq written 5 months ago by Fill70
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Comment: C: Error: could not find function "exptData"
... Just try to change your R version to earlier one ...
written 5 months ago by Fill70
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Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
... Could you give an example of Ensembl transripts to UniProt ids translation please? ...
written 5 months ago by Fill70
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Comment: C: downloading pheno data
... You have to write it by yourself. ...
written 5 months ago by Fill70
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Comment: C: What is the best tool for isoform function prediction?
... They used pretty old tools like HMMER, signalP, tmHMM and RNAMMER. I hope there is better tool for functional isoform analysis. And trinity doesn't analyze isoforms. ...
written 5 months ago by Fill70

Latest awards to Fill

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Calculating FPKM after htseq-count
Supporter 5 months ago, voted at least 25 times.
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: Calculating FPKM after htseq-count
Appreciated 7 months ago, created a post with more than 5 votes. For A: Calculating FPKM after htseq-count
Scholar 7 months ago, created an answer that has been accepted. For A: Calculating FPKM after htseq-count
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Calculating FPKM after htseq-count

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