User: Fill

gravatar for Fill
Fill70
Reputation:
70
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Last seen:
1 year ago
Joined:
2 years, 5 months ago
Email:
s************@gmail.com

Posts by Fill

<prev • 24 results • page 1 of 3 • next >
0
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7.5k
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Comment: C: Calculating FPKM after htseq-count
... You're right. Sum of all **reads** which align protein-coding genes. Gene lengths and counts are for all genes. ...
written 18 months ago by Fill70
0
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1
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1.2k
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1
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Comment: C: How to extract only TUMOR variants from vcf file?
... Thank you for respond, but the question is how to correct already exsiting vcf file with tumor and normal samples. ...
written 23 months ago by Fill70
3
votes
1
answer
1.2k
views
1
answer
How to extract only TUMOR variants from vcf file?
... Hi everyone I have a vcf file with normal+tumor variants after varscan. I need only tumor variants, so I tryed to do > vcftools --vcf ... --out ... -c TUMOR but it doesn't work. I really appreciate any help Thanks in advance ...
vcf vcftools written 23 months ago by Fill70
0
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1
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684
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1
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Comment: C: Biallelic inactivation detection
... Thank you for the answer. How to get phased VCF if I use Varscan? It it possible to get phased data from VCF after Varscan? Or I need to change my pipeline? ...
written 2.0 years ago by Fill70
7
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1
answer
684
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1
answer
Biallelic inactivation detection
... Hello everyone, Is there any way to detect biallelic inactivation in certain genes? Thanks in advance! ...
genome gene rna-seq written 2.0 years ago by Fill70 • updated 2.0 years ago by Pierre Lindenbaum120k
0
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2
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1.0k
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Comment: C: Cancer expression data sets
... Is there any information about responders and non-responders on TCGA? ...
written 2.2 years ago by Fill70
7
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2
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1.0k
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7 follow
2
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Cancer expression data sets
... I'm looking for expression data sets for any type of cancer **with information about therapy results** (response and non-response data). Thanks in advance. ...
chip-seq rna-seq written 2.2 years ago by Fill70
0
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1
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794
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1
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Comment: C: Error: could not find function "exptData"
... Just try to change your R version to earlier one ...
written 2.2 years ago by Fill70
0
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3
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8.4k
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3
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Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
... Could you give an example of Ensembl transripts to UniProt ids translation please? ...
written 2.2 years ago by Fill70
0
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0
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903
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0
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Comment: C: downloading pheno data
... You have to write it by yourself. ...
written 2.2 years ago by Fill70

Latest awards to Fill

Popular Question 23 months ago, created a question with more than 1,000 views. For Calculating FPKM after htseq-count
Supporter 2.2 years ago, voted at least 25 times.
Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: Calculating FPKM after htseq-count
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: Calculating FPKM after htseq-count
Scholar 2.3 years ago, created an answer that has been accepted. For A: Calculating FPKM after htseq-count
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: Calculating FPKM after htseq-count

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