User: Fill

gravatar for Fill
Fill70
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70
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Last seen:
1 week, 4 days ago
Joined:
1 year, 1 month ago
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Posts by Fill

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Calculating FPKM after htseq-count
... You're right. Sum of all **reads** which align protein-coding genes. Gene lengths and counts are for all genes. ...
written 11 weeks ago by Fill70
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1
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524
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1
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Comment: C: How to extract only TUMOR variants from vcf file?
... Thank you for respond, but the question is how to correct already exsiting vcf file with tumor and normal samples. ...
written 7 months ago by Fill70
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1
answer
524
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1
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How to extract only TUMOR variants from vcf file?
... Hi everyone I have a vcf file with normal+tumor variants after varscan. I need only tumor variants, so I tryed to do > vcftools --vcf ... --out ... -c TUMOR but it doesn't work. I really appreciate any help Thanks in advance ...
vcf vcftools written 7 months ago by Fill70
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362
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1
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Comment: C: Biallelic inactivation detection
... Thank you for the answer. How to get phased VCF if I use Varscan? It it possible to get phased data from VCF after Varscan? Or I need to change my pipeline? ...
written 8 months ago by Fill70
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1
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362
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1
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Biallelic inactivation detection
... Hello everyone, Is there any way to detect biallelic inactivation in certain genes? Thanks in advance! ...
genome gene rna-seq written 8 months ago by Fill70 • updated 8 months ago by Pierre Lindenbaum104k
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652
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Comment: C: Cancer expression data sets
... Is there any information about responders and non-responders on TCGA? ...
written 10 months ago by Fill70
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2
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652
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7 follow
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Cancer expression data sets
... I'm looking for expression data sets for any type of cancer **with information about therapy results** (response and non-response data). Thanks in advance. ...
chip-seq rna-seq written 10 months ago by Fill70
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Comment: C: Error: could not find function "exptData"
... Just try to change your R version to earlier one ...
written 10 months ago by Fill70
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3
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6.2k
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3
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Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
... Could you give an example of Ensembl transripts to UniProt ids translation please? ...
written 10 months ago by Fill70
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Comment: C: downloading pheno data
... You have to write it by yourself. ...
written 10 months ago by Fill70

Latest awards to Fill

Popular Question 6 months ago, created a question with more than 1,000 views. For Calculating FPKM after htseq-count
Supporter 11 months ago, voted at least 25 times.
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: Calculating FPKM after htseq-count
Appreciated 12 months ago, created a post with more than 5 votes. For A: Calculating FPKM after htseq-count
Scholar 12 months ago, created an answer that has been accepted. For A: Calculating FPKM after htseq-count
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Calculating FPKM after htseq-count

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