User: Andy.Judell

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Posts by Andy.Judell

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Answer: A: Downloading SRA data using the SRA Toolkit
... I had to use the find command to find the directory which is located at the root directory rather than the user directory. prefetch downloads SRA data to ``` ~/ncbi/public/sra ``` despite having the tools installed at ``` /home/[user-name]/ncbi ``` ...
written 6 days ago by Andy.Judell0
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Answer: A: Problem with Tophat / Bowtie pipeline
... You seem to be missing two key variables in your tophat command. Your command lacks a pointer for the single end or paired end sequences that you would like to map as well as the bowtie index associated with your reference annotation file (I'm assuming 'Reference="/home/lgts/Desktop/TopBow/Referenc ...
written 13 months ago by Andy.Judell0

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