User: bruseq

gravatar for bruseq
bruseq20
Reputation:
20
Status:
New User
Location:
Last seen:
1 month, 3 weeks ago
Joined:
2 years, 1 month ago
Email:
d*****************@gmail.com

Posts by bruseq

<prev • 23 results • page 1 of 3 • next >
2
votes
2
answers
327
views
2
answers
Remove contamination before assembly
... Hello everyone, I am trying to draft a fungal genome, but the raw sequence R1 and R2 contain contamination, so before doing assembly I mapped Raw reads using bowtie2 against refseq Bacterial db and mitochondrial db, then exact unmapped reads using samtools {the unmapped reads are contamination free ...
genome assembly draft genome written 4 months ago by bruseq20 • updated 4 months ago by h.mon23k
0
votes
1
answer
253
views
1
answers
Answer: A: Masurca assembly denovo
... Thank you for the reply dear ones, I solved this error. ...
written 4 months ago by bruseq20
0
votes
1
answer
253
views
1
answer
Masurca assembly denovo
... Hello everyone I am try assemble a denovo genome using MaSuRCA assembler. but it generate an error: ***Assembly stopped or failed, see CA.log*** Please guide me how to solve this error. Thanks, Divya ...
genome assembly denovo written 4 months ago by bruseq20
0
votes
0
answers
3.2k
views
0
answers
Comment: C: How to deal with MSTRG tag without relevant gene name?
... Hello everyone, I also have above same problem i.e; ( in my case Cuffdiff gives gene ID but there specific gene names are missing) I used reference.gtf file during every steps. I also try to get specific gene name using there chr. locus number but no result found, did blast also. No any information ...
written 10 months ago by bruseq20
0
votes
0
answers
350
views
0
answers
Popoolationte Samro.pl error
... Hello everyone, I am using Popoolationte tool. While using tool an error message occur i.e; " sam is not empty in the end at samro.pl line 114, <$fh> line 113468176." while using Samro.pl script for paired-end of Popoolationte. Both the given input sam files are equal in size. I am not get ...
popoolationte samformat written 19 months ago by bruseq20
0
votes
1
answer
719
views
1
answers
Comment: C: Samtools mpileup degenerative characters
... Thanks for the comment @ Saumel That I know the -1 are the indels but I didn't get why these "y" and "s" characters also encounter with -1 in the mpileup file. ...
written 19 months ago by bruseq20
0
votes
1
answer
719
views
1
answers
Comment: C: Samtools mpileup degenerative characters
... Hello sir, Now I installed samtools version-1.5 but the problem is persist in the mpileup file. Any suggestion. ...
written 19 months ago by bruseq20
0
votes
1
answer
719
views
1
answers
Comment: A: Samtools mpileup degenerative characters
... Thanks for your reply, I m using samtools version `0.1.19-96b5f2294a` Here below I m posting the command samtools mpileup -f ref_genome.fa input.bam > output.mpileup Error lines 2 3616324 A 211 .,,.,..,-1y...,..,,..............,,,,,,......,,,...,,,....,,,....,,,,,,,.....,,..,....... ...
written 19 months ago by bruseq20 • updated 19 months ago by Istvan Albert ♦♦ 79k
2
votes
1
answer
719
views
7 follow
1
answer
Samtools mpileup degenerative characters
... Hello everyone, I am using samtools to get mpileup file. but there is an degenerative characters "-1y, -1Y, -1s" etc. also shown in the mpileup file. I want to know why these degenerative characters are shown in mpileup file. Please help me to sort the above problem. Thanks, Divya ...
samtools degenrative characters mpileup written 19 months ago by bruseq20 • updated 7 months ago by swbarnes24.8k
0
votes
4
answers
832
views
4
answers
Comment: C: Popoolation variance-sliding.pl output shows only zero value
... Please anyone guide me how to solve this error. ...
written 19 months ago by bruseq20

Latest awards to bruseq

Popular Question 9 weeks ago, created a question with more than 1,000 views. For extract SNP, variants
Popular Question 3 months ago, created a question with more than 1,000 views. For extract SNP, variants
Popular Question 3 months ago, created a question with more than 1,000 views. For STRUCTURE software file format
Popular Question 10 months ago, created a question with more than 1,000 views. For extract SNP, variants
Popular Question 16 months ago, created a question with more than 1,000 views. For R unused arguments

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1848 users visited in the last hour