User: rajdeepjaswal52

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Posts by rajdeepjaswal52

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Answer: A: How To Correctly Classify Gene Families?
... Hey everyone, I am working on genome-wide identification one gene family in fungal species. Using comparative genomics I identified members of this family in various species. Now I want to classify newly found members. I annotated these proteins using NCBI- CD search as well as using InterPro, P ...
written 19 months ago by rajdeepjaswal520
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Comment: C: anlyzing expression of gene from sra database
... What I am trying to do, I will explain it to you, I wanted to see the expression of a gene family. I have identified those superfamily genes from different plant pathogens and then I am looking for expression level of those genes in corresponding organisms using SRA experiment ( pathogen infecte ...
written 2.6 years ago by rajdeepjaswal520
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Comment: A: anlyzing expression of gene from sra database
... https://www.ncbi.nlm.nih.gov/news/11-19-2013-SRA-BLAST/ ...
written 2.8 years ago by rajdeepjaswal520
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Comment: C: anlyzing expression of gene from sra database
... what if I do SRA BLAST against particular SRA experiment for target gene and then Count up the total reads in a sample and divide that number by 1,000,000 – this will be “per million” scaling factor. Divide the read counts by the “per million” scaling factor. This normalizes for sequencing dep ...
written 2.8 years ago by rajdeepjaswal520
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anlyzing expression of gene from sra database
... hi all i am very new to bioinformatics.I wanted to see the expression of single gene from different transcriptomic data of organisms without downloading sra data and without doing assembly .what could be simplest way to find the expression. thanks in advance ...
rna-seq written 2.8 years ago by rajdeepjaswal520 • updated 2.8 years ago by Michael Dondrup46k

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