User: kaixian110

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kaixian1100
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Posts by kaixian110

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how to judge the genotype for the postion with 'rs8175347' ?
... Hello, In these days ,I got a question about how to judge the genotype for the specified position with using a sample BAM file . perhaps it's easy to judge SNV ,but maybe to judge INDEL is hard to complete. For example , for the rs8175347 , which one in these genotypes '6TA/7TA' or ...
indel snp sequencing written 10 days ago by kaixian1100 • updated 10 days ago by Kevin Blighe7.3k
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Comment: A: Plotting Density Of Snps On Chromosomes
... HI, I just have a bed file ,not snp . I wanna view genes and bed region genome distribuition . my bed file is like this : chr1 222 333 Gene1 chr2 223 344 Gene2 ..... ...
written 3 months ago by kaixian1100
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how to plot points distribution from a bed file and mark genes for every region ?
... HI, I got a bed file , I wann view this bed region distribution at the genome (hg19) , and I also wanna to show gene at every region at that points distribution figure ? Best ...
genome R next-gen snp written 3 months ago by kaixian1100
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Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
... how about Toil ? it's not suitable for bioinformatics,I think. ...
written 5 months ago by kaixian1100
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Comment: C: Is there an C++ tool to implement GATK ?
... HI, It' means to re-write GATK to use C++ or other language. ...
written 8 months ago by kaixian1100
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Comment: A: Removing PCR duplicates from .fastq without .bam alignment
... Hi , do you know the same function tools written by python ? ...
written 10 months ago by kaixian1100
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Answer: A: Counting number of duplicated reads from fastq file
... HI , have you found any solutions to extract duplication reads from paired fastq files ? ...
written 10 months ago by kaixian1100

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