User: a.moner

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a.moner0
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Posts by a.moner

<prev • 11 results • page 1 of 2 • next >
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Comment: C: get species names from newick phylogenetic tree file
... I tried ape But the problem was importing the phylogenetic file it is too big for copy and paste and made error And I couldn't use it as import data For python I got this error ete3 command not found ...
written 2 days ago by a.moner0
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get species names from newick phylogenetic tree file
... Hi I have a newick phylogeny file has more than 1000 species. I want to extract just species name in different file. I appreciate your help ...
genome R next-gen alignment sequencing written 5 days ago by a.moner0
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Remove ambiguous bases from alignment sequence
... Hi, could you please help me with this I have very big alignment file and there are many ambiguous bases, 1- I want to replace them (Y, W, S, R, M and K) with ( _ ) 2- remove the entire column that includes this ambiguity and keep just the four bases A, T, C, G and remove all gaps thanks here ...
genome sequence next-gen alignment sequencing written 18 months ago by a.moner0 • updated 17 months ago by Biostar ♦♦ 20
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Comment: C: Trimming gapped ends from a multiple alignment error
... yes I used bash script trimend.sh ...
written 23 months ago by a.moner0
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Comment: C: Trimming gapped ends from a multiple alignment error
... hi this is the link to the previous post https://www.biostars.org/p/172496/#237015 ...
written 23 months ago by a.moner0
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Trimming gapped ends from a multiple alignment error
... Hi, there is a previous post Trimming gapped ends from a multiple alignment. I tried it but I got this error cut: invalid byte, character or field list. can someone help me with that THANKS ...
R next-gen sequence alignment written 23 months ago by a.moner0
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Comment: C: Trimming gapped ends from a multiple alignment
... I am trying it but I have this error cut: invalid byte, character or field list do you have any suggestion ...
written 23 months ago by a.moner0
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Comment: C: Trimming gapped ends from a multiple alignment
... Hi I am trying this script but I got this error cut: invalid byte, character or field list. any suggestion what is the problem? ...
written 23 months ago by a.moner0
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(Closed) combine fasta sequence
... Hi I have sequences like this > abc.ff ccgtac > qwe.oo aattcg > dee.ff aatt > rte.oo ttcc and I want to be like this > ff ccgtacaatt > oo aattcgttcc can you tell me how to do it thsanks ...
genome sequence alignment R written 24 months ago by a.moner0 • updated 24 months ago by genomax60k
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Comment: C: create BED files for exons
... Hi It is complicated a little bit I have file A has genes sequence from chromosome 1(refrence) File B has full sequence of chromosome 1 (sample) What I did is aligne sample to the reference to get these genes for the sample The results is getting the full genes which aligned to the reference ge ...
written 24 months ago by a.moner0

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