User: fabbri.marco

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Posts by fabbri.marco

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number reads fastq
... I am analysing a cancer panel. I am looking atf a number of reads for each fastq in the same flowcells. I have seen a difference in the number od reads when I have to start to worry? below tthe table: file num reads percentage 1_S1_L001_R1_001.fastq.gz 1001223 2.58924706156174 1_S1_L001 ...
fastq written 11 days ago by fabbri.marco0 • updated 11 days ago by WouterDeCoster20k
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Human Breast Cancer Panel QIAseq manifest
... I am looking for the manifest file for QIAsq Human Breast Cancer Panel DHS-001Z. I google for it but I could not find it. Any suggestion? thanks Marco ...
panel job manifest written 12 days ago by fabbri.marco0 • updated 12 days ago by Istvan Albert ♦♦ 73k
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intersect snp and exon coordinates
... I intersected exon coordinates with coordinates of mutations and I get the bed file with exons that contain mutations. This can be done with bedtools. I would like to do a little bit more articulates, I would like to do the same but select only exons that intersect with two mutations. Any suggesti ...
sequence snp written 6 months ago by fabbri.marco0 • updated 6 months ago by Goutham Atla7.2k

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