... Hi everyone!
Apologies in advance for the long winded question!
Basically, I have been accessing publicly available data in order to shed some light on the relationship between the expression of CD200 (which is a cell surface protein that we are interested in) and cancer prognosis. The other questi ...
... You could try using [PubMed's 'Advanced Search'](https://www.ncbi.nlm.nih.gov/pubmed/advanced) a try.
All you need to do is plug in the cpg island you are looking for into the search box and then in the dropdown menu to the left, select to search for this cpg island in the title, abstract or all fi ...
written 11 months ago by
Alex Gibbs • 40
11 months ago by
RamRS ♦ 30k
... Hi all,
I have 3 disease groups that I would like to compare. Each disease group has 3 samples. Illumina microarray has been performed on each sample along with matched controls.
I have generated 9 DEG files for each sample (Affected 1A vs Control, Affected 1B vs Control, Affected 1C vs Control et ...
... Hi all!
I have generated 18 DEG files which consist of 23,835 genes each (7x Affected_v_Control, 7x Affected_v_Control2, 4x Control_v_Control2). I haven’t filtered these files for Adj.P or LogFC yet. I have then opened these up in Excel and ordered them by probe ID, then taken the LogFC values and ...
... Hi all,
I would like to find out what the mouse Stat3 transcription factor **binds** to and the full signalling pathway(s) that it is involved in.
So far, I have only managed to find a signalling pathway that ends in Stat3, and subsequently genes that bind to Stat3.
I have tried JASPAR, but the w ...
... Hi everyone,
I have had RNAseq performed on mouse samples (12 samples, 4 groups) and have the results ready to plug into Gene Set Enrichment Analysis (GSEA) software.
I notice that there are plenty of human gene sets available on MSigDB, but not many for mouse. I would like to run GSEA with 6 sign ...
I have been given the task of assembling a 'new' Ecoli genome and analysing the genes present etc.
The Ecoli is a new strain, and has been taken and run on a Nextseq 500 in high-output mode with 150bp paired end reads.
The 'raw' files that I have is the forward and reverse reads.
I have i ...