User: Z-F

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Z-F10
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10
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New User
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1 year ago
Joined:
5 years, 10 months ago
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z*********@yahoo.com

Posts by Z-F

<prev • 9 results • page 1 of 1 • next >
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Comment: A: An error when using ENCODE-Phantompeakqualtools
... The operating system which I ma working is Linux 14.04. At the end, I found that I should install gawk and then it worked properly. Thanks .. ...
written 14 months ago by Z-F10
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An error when using ENCODE-Phantompeakqualtools
... Dear All, I am a newbie in ChIP-seq analysis and now I am trying to assess NSC/RSC values using "phantompeakqualtools", but unfortunately I got an error and cant find any similar posts for that. Would you please help me ! I used this command to determine strand cross-correlation peak: Rscript /da ...
nsc R awk chip-seq rsc written 14 months ago by Z-F10
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Comment: C: ChIP seq- input DNA control for normalization
... Dear jotan, Thanks, I think we should sequence the "input DNA" as all of you mentioned. Thanks for the reply. ...
written 21 months ago by Z-F10
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Comment: C: ChIP seq- input DNA control for normalization
... Dear Michele, Thanks for your comprehensive reply. It helped a lot. ...
written 21 months ago by Z-F10
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Comment: C: ChIP seq- input DNA control for normalization
... Dear John, Thanks for your reply. Actually, the problem is that I am going to sonicate three similar HEK293 cell lines which are all transfected with a same gene but in WT and mutant forms and for all of these I only use one antibody (anti-GFP). Can I still use one "input DNA'' for all 3 samples (3 ...
written 21 months ago by Z-F10
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ChIP seq- input DNA control for normalization
... Hi everyone. I am a new one in ChIP-seq and planning to do it for a poorly characterized TF. We are going to do ChIP on transfected HEK293 cells with WT and 2 other mutant forms of our specific gene which makes three samples to be sequenced. Regarding the negative control "Input DNA", the amount of ...
next-gen chip-seq written 21 months ago by Z-F10 • updated 5 days ago by Bogdan320
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Comment: A: Segmentation Fault (Core Dumped)-Bwa Indexing Ref Genome
... wg.fa is 3.2GB and the available RAM memory of my computer is 3980 MB in total.However,used memory is about 3056MB and I have only 924MB free memory! Is this the problem? ...
written 5.0 years ago by Z-F10
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Segmentation Fault (Core Dumped)-Bwa Indexing Ref Genome
... Dear All, I am working with program: bwa (alignment via Burrows-Wheeler transformation),Version: 0.6.2 The OS and its version is Linux Linux-Pc.LabDomain.com 3.3.4-5.fc17.i686.PAE #1 SMP Mon May 7 17:37:39 UTC 2012 i686 i686 i386 GNU/Linux. I used the following command to index my ref genome( I ha ...
bwa written 5.0 years ago by Z-F10 • updated 2.4 years ago by Biostar ♦♦ 20
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Analysis Of The Genotyping Data
... Dear all, I have genotyping data of 1 person(Done with affymetrix SNP6.0 array)and I want to check the homozygote regions to find if they include one of the genes related to the disease of that individual. Is it possible to find the homozygote regions for just 1 person(without genotyping data of the ...
array copynumber affymetrix snp genotyping written 5.9 years ago by Z-F10 • updated 5.9 years ago by Malachi Griffith16k

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Popular Question 5.0 years ago, created a question with more than 1,000 views. For Analysis Of The Genotyping Data
Popular Question 5.0 years ago, created a question with more than 1,000 views. For Segmentation Fault (Core Dumped)-Bwa Indexing Ref Genome

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