User: gopal2706

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gopal270610
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Posts by gopal2706

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Comment: C: BioGRID geneList extraction
... I forgot to add - writing directly to the BIOGRID did not help. No response from anyone there. ...
written 20 months ago by gopal270610
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BioGRID geneList extraction
... Hi, I am looking for a way to obtain pathway/process specific gene lists as stated in the BioGRID 2015 update (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383984/). Specifically the UPS (Ubiquitin Proteasome System). There is a mention of a curation which led to assignment of 1251 human genes t ...
gene lists biogrid ups written 20 months ago by gopal270610 • updated 18 months ago by Biostar ♦♦ 20
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No GO term enrichment in differentially expressed genes
... I am analyzing an RNA-seq dataset (with biological triplicates) of a transfection experment. Using DeSeq2, i obtain a list of genes which are differentially expressed across the samples (vs empty vector in each case). However when i try to do a GO-term analysis, i obtain no enrichment. What is more ...
go-term enrichment-analysis rna-seq written 2.0 years ago by gopal270610
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Yeast 3'UTR sequence fasta file
... I need the sequences of 3'UTRs of yeast genes. To my surprise Biomart does not have the information and spits out a "Sequence unavailable" statement for all the genes. In the SGD database,their repository has termed the utr_fasta files as obsolete (http://downloads.yeastgenome.org/sequence/S288C_ref ...
genome annotation sequence 3'utr yeast written 2.1 years ago by gopal270610 • updated 2.1 years ago by dyollluap300

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