User: gprezza

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gprezza30
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Posts by gprezza

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Search if a single primer could bind to multiple sequences with Python
... I need a way to check if my primer could be used as such in the target sequence. For this reason, I need a tool that weighs mismatches based on their location in the primer (i.e. almost ignore the ones in the 5' end), exactly like in-silico PCR tools do. If i get it correctly, seqkit doesn't do that ...
written 6 weeks ago by gprezza30
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Search if a single primer could bind to multiple sequences with Python
... Hi all, I have one primer and a list of sequences. I want to check to which of the sequences (if any) the primer could bind to. It's like an in-silico PCR (so mismatches should be more penalized at the 3' end of the primer than at the 5' one etc.), but with only one primer. I can't seem to find a ...
python alignment primer primer extension written 6 weeks ago by gprezza30
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Comment: C: Folding RNA on python
... Thanks for the comment, I updated my question. ...
written 9 months ago by gprezza30
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Comment: C: Folding RNA on python
... Thanks for the comment, I updated my question. ...
written 9 months ago by gprezza30
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Folding RNA on python
... Hi all, I'd like to write a script in python that, given a set of RNA sequences, finds the ones with the strongest predicted folding. A quick and dirty way like folding them and picking the ones with a - delta G below a set threshold would suffice in my case. I was looking at two "classical" fold ...
python rna folding written 9 months ago by gprezza30 • updated 5 days ago by jtimmons30
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How to find the longest annotated 3' UTR in human or mouse genomes?
... I would like to find out what are the longest know 3' UTRs in human and mouse genomes. This should of course also take into account alternative polyadenylation. ...
genome mouse sequence utr human written 3.0 years ago by gprezza30

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