User: Ric

gravatar for Ric
Ric160
Reputation:
160
Status:
Trusted
Location:
Australia
Last seen:
19 hours ago
Joined:
5 years, 10 months ago
Email:
m*******@gmail.com

Posts by Ric

<prev • 109 results • page 1 of 11 • next >
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Comment: C: consensus sequence from BAM file
... I do not know what to do with 50/50 distribution. What would error correction for PacBio do in this case? ...
written 7 days ago by Ric160
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Comment: C: consensus sequence from BAM file
... Good question. What would error correction for PacBio do in this case? ...
written 7 days ago by Ric160
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Comment: C: consensus sequence from BAM file
... it is nuclear data.. ...
written 7 days ago by Ric160
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Comment: C: consensus sequence from BAM file
... I do not care about them. ...
written 7 days ago by Ric160
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consensus sequence from BAM file
... Hi, I used `samtools mpileup -uf chr01.fasta chr01.bam | bcftools call -c | vcfutils.pl vcf2fq > chr01-cns.fastq` to make a consensus sequence from BAM file. However, it has used IUPAC characters. How would it be possible to choose a base with the most appearance at locus position rather than I ...
vcfutils samtools bcftools written 8 days ago by Ric160
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Comment: C: mummer results merging
... I got `ERROR: Could not parse delta file, BAFB.contigs.clean.delta error no: 400` with `show-coords BAFB.contigs.clean.delta > Scaffold.coords` ...
written 10 days ago by Ric160
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Comment: C: mummer results merging
... I think that is the solution: `sed 1,2d BAFB.contigs.clean.*.delta > BAFB.contigs.clean.delta` ...
written 10 days ago by Ric160
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mummer results merging
... Hi, I splited my assembly into 200 parts (part1.fasta - part199.fasta) and ran **nucmer -p test pseudochromosome-1-11.fasta part1.fasta**. As result I got the following extensions: - *.delta - *.ntref - *.mgaps How should I merge the 200 results into one alignment? Thank you in advance. ...
mummer nucmer written 10 days ago by Ric160
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extracting blast hit whith the highest bit score
... Hi, I have the following blast out tig00007144 chr03 97.352 7742 145 22 23113 30824 33203431 33211142 0.0 13106 tig00007144 chr03 96.995 5590 82 31 1 5564 33172892 33178421 0.0 9313 tig00007144 ...
blast written 22 days ago by Ric160 • updated 22 days ago by Bioaln230
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Comment: C: How to reduce the size of blastall output
... I trying to plot synteny plots between a reference genome which has chromosomes and a new contig based assembly. ...
written 29 days ago by Ric160

Latest awards to Ric

Popular Question 9 days ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Centurion 29 days ago, created 100 posts.
Great Question 8 weeks ago, created a question with more than 5,000 views. For Fastqc And Require Tools
Scholar 9 weeks ago, created an answer that has been accepted. For A: topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
Popular Question 3 months ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 5 months ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 6 months ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Great Question 11 months ago, created a question with more than 5,000 views. For Ignore Reads In Bwa
Popular Question 11 months ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to find out codon changes in non-synonymous and synonymous SNPs
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Ignore Reads In Bwa
Appreciated 3.5 years ago, created a post with more than 5 votes. For Fastqc And Require Tools
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Ignore Reads In Bwa
Student 5.6 years ago, asked a question with at least 3 up-votes. For Fastqc And Require Tools

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