User: Ric
Ric • 190
- Reputation:
- 190
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- Australia
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- 5 days, 15 hours ago
- Joined:
- 6 years, 8 months ago
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Posts by Ric
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... Have any new methods came up? ...
written 6 days ago by
Ric • 190
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... DASCRUBBER-wrapper has a method called [rename_reads_with_fake_pacbio_names](https://github.com/rrwick/DASCRUBBER-wrapper/blob/master/dascrubber_wrapper.py#L216). I think you convert the subreads to fasta file. ...
written 21 days ago by
Ric • 190
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Comment:
C: De novo plant genome assembly
... DBG2OLC is a hybrid assembler. ...
written 21 days ago by
Ric • 190
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... Did anyone use FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796) or is HALC better?
...
written 25 days ago by
Ric • 190
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... Did you try to use FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796)? ...
written 25 days ago by
Ric • 190
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... New tools have been published for error correcting PacBio reads with Illumina reads:
- HALC (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1610-3 )
- FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796)
I am just wondering which tool do you think is the best one ...
written 26 days ago by
Ric • 190
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... Try out dbg2olc (https://github.com/yechengxi/DBG2OLC) ...
written 27 days ago by
Ric • 190
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Comment:
C: Annotation pipelines in 2018
... The expectation is to get a high-quality annotation. Do you only run Eugene and how do you know which parameter has to be tweaked?
...
written 5 weeks ago by
Ric • 190
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2
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267
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Comment:
C: Annotation pipelines in 2018
... The genome is an allotetraploid with 3gb in size and 5000 contigs. The N50 is 1.3 Mb. ...
written 5 weeks ago by
Ric • 190
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... Thank you, but do you have any scripts how to generate the input files for it?
Thank you in advance ...
written 5 weeks ago by
Ric • 190
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