User: Ric

gravatar for Ric
Ric190
Reputation:
190
Status:
Trusted
Location:
Australia
Last seen:
5 days, 15 hours ago
Joined:
6 years, 8 months ago
Email:
m*******@gmail.com

Posts by Ric

<prev • 140 results • page 1 of 14 • next >
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Comment: C: Detecting Polyploidy Using An Assembly
... Have any new methods came up? ...
written 6 days ago by Ric190
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Answer: A: Sequence Header Convertion from Nanopore to PacBio
... DASCRUBBER-wrapper has a method called [rename_reads_with_fake_pacbio_names](https://github.com/rrwick/DASCRUBBER-wrapper/blob/master/dascrubber_wrapper.py#L216). I think you convert the subreads to fasta file. ...
written 21 days ago by Ric190
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Comment: C: De novo plant genome assembly
... DBG2OLC is a hybrid assembler. ...
written 21 days ago by Ric190
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Comment: C: PacBio long read error correction tools
... Did anyone use FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796) or is HALC better? ...
written 25 days ago by Ric190
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Comment: C: LoRDEC hybrid error corrected read usage
... Did you try to use FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796)? ...
written 25 days ago by Ric190
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Error correcting PacBio reads with Illumina reads
... New tools have been published for error correcting PacBio reads with Illumina reads: - HALC (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1610-3 ) - FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796) I am just wondering which tool do you think is the best one ...
correction assembly pacbio error illumina written 26 days ago by Ric190
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Comment: C: Hybrid assembly PacBio Illumina in 2018 ?
... Try out dbg2olc (https://github.com/yechengxi/DBG2OLC) ...
written 27 days ago by Ric190
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Comment: C: Annotation pipelines in 2018
... The expectation is to get a high-quality annotation. Do you only run Eugene and how do you know which parameter has to be tweaked? ...
written 5 weeks ago by Ric190
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Comment: C: Annotation pipelines in 2018
... The genome is an allotetraploid with 3gb in size and 5000 contigs. The N50 is 1.3 Mb. ...
written 5 weeks ago by Ric190
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Comment: C: circos plot to compare genomes plot
... Thank you, but do you have any scripts how to generate the input files for it? Thank you in advance ...
written 5 weeks ago by Ric190

Latest awards to Ric

Popular Question 21 days ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Fastqc And Require Tools
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Fastqc And Require Tools
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Popular Question 6 months ago, created a question with more than 1,000 views. For estimate genome coverage
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Centurion 10 months ago, created 100 posts.
Great Question 11 months ago, created a question with more than 5,000 views. For Fastqc And Require Tools
Scholar 12 months ago, created an answer that has been accepted. For A: topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
Popular Question 13 months ago, created a question with more than 1,000 views. For Fastqc And Require Tools
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Popular Question 2.9 years ago, created a question with more than 1,000 views. For How to find out codon changes in non-synonymous and synonymous SNPs
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