User: Ric

gravatar for Ric
Ric160
Reputation:
160
Status:
New User
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Last seen:
8 years, 7 months ago
Joined:
8 years, 10 months ago
Email:
3***@biostars.org

Posts by Ric

<prev • 3 results • page 1 of 1 • next >
3
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Snps Comparison
... Hello, I would like to compare SNPs from different methods: number of SNPs SNPs postion (position where method A has SNPs but not B and vice versa. Where both have SNPs) I would be interested to get a output file which contain all above information and also would like to see the differences vis ...
bedtools gff vcftools snp written 8.7 years ago by Ric160 • updated 8.7 years ago by Occam390
12
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2
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14k
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6 follow
2
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Difference Between Mapped And Unmapped Reads
... Hello, I aligned paired-end files with BWA. BWA's sam file contain all reads, whether they hit the reference or not. With the following command I filtered only reads which hit the reference. $ bwa sampe <reference.fasta> F3.sai F5.sai F3.fastq F5.fastq | \ awk '{if (substr($1,1,1)=="@") {pri ...
paired samtools bwa written 8.7 years ago by Ric160 • updated 2.8 years ago by Biostar ♦♦ 20
57
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6
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32 follow
6
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Estimate Insert Size In Paired-End/Mate-Pair
... Hello, I have Illumina paired-end/mate-pair reads and I would like to find out the min and max insert size is. For Aligner like SOAP2 is necessary to specify the insert size? What is the best way to calculate the min and max insert size? Thank you in advance. ...
next-gen paired alignment sequencing written 8.8 years ago by Ric160 • updated 8.8 years ago by Ketil4.0k

Latest awards to Ric

Popular Question 8.7 years ago, created a question with more than 1,000 views. For Difference Between Mapped And Unmapped Reads
Appreciated 8.8 years ago, created a post with more than 5 votes. For Estimate Insert Size In Paired-End/Mate-Pair
Great Question 8.8 years ago, created a question with more than 5,000 views. For Estimate Insert Size In Paired-End/Mate-Pair
Popular Question 8.8 years ago, created a question with more than 1,000 views. For Estimate Insert Size In Paired-End/Mate-Pair
Student 8.8 years ago, asked a question with at least 3 up-votes. For Estimate Insert Size In Paired-End/Mate-Pair

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