User: flavia

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flavia0
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Posts by flavia

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Comment: C: Tools to analyze Illumina's HumanHT-12 v4 microarray expression data?
... Dear poisonAlien, I have downloaded GEO dataset based on Illumina HumanHT-12 V4.0 expression beadchip platform, the raw data contains 20 .adat files and 2 .txt files, I like to used your script for that purpose would you like to tell me where to edit this script and add my all .adat files to analyze ...
written 12 months ago by flavia0
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Modeller Energy Scoring
... Dear fellows, I have done mutation by using modeller it generate a log file which contains following energy score. I want to know how this energy minimize and what is the criteria of the scoring. model105.log:Current energy : 423.3942 model105.log:Current ...
modeller written 14 months ago by flavia0
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Comment: C: Mutation and Energy minimzation by using modeller
... I have updated it... ...
written 15 months ago by flavia0
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Mutation and Energy minimzation by using modeller
... Dear fellows, I have a protein sequence which has no template, so by using Quark I selected the first model (.pdb). I want to use modeller to mutate a amino acid at specific position and do its energy minimzation. I found a script on modeller website which has a potential to solve my query ([htt ...
sequence written 15 months ago by flavia0
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CAI and strandbias online tool
... Dear fellows, I am following a paper entitled “Comparative Genomics Analysis of Mycobacterium ulcerans for the Identification of Putative Essential Genes and Therapeutic Candidates” I have tried several time to contact with the author but I don't get any reply then I post here. I firstly retrieve th ...
strandbias cai written 20 months ago by flavia0
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Comment: C: d/f b/w Recombinant protein & plasmid DNA expression
... I am a bioinformatician by myself i ask this question because i am buying dengue virus stereotypes for my research which is purely In silico but for some reasons we have to buy this. thts why ask this question. ...
written 20 months ago by flavia0
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(Closed) d/f b/w Recombinant protein & plasmid DNA expression
... i want to know what is the the exact difference between recombinant protein and plasmid DNA expression protein and which one is better for research purpose (specifically for dengue virus). I really appreciate if you can answer it and if you have any supporting evidence so kindly send me that link. ...
plasmid protein written 20 months ago by flavia0
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consensus of msa
... Hi, Anyone knows an online tool which can do multiple sequence alignment(amino acid) and also tells it consistency (in numbers) and consensus sequence basically i need the consensus of msa and its statistical value. ...
msa written 21 months ago by flavia0 • updated 21 months ago by Jean-Karim Heriche18k
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conversion of genbank id into refseq
... hi fellows, I have genbank id which i want to convert into refseq id. Which tool i should use i have lots of ids i try to use david but its not working. example (genbank id): ABO11412.1 ABO11444.2 ABO11445.2 ABO11446.2 ABO11571.2 desired ids:(just a sample) WP_000289452.1 WP_000344169.1 WP_000442 ...
id refseq genbank written 21 months ago by flavia0 • updated 21 months ago by arnetmit0
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Comment: C: how to retrieve protein sequences from enzyme/protein ids of kegg
... No, i will give you short briefing of work basically i retrieve unique metabolic pathways of pathogenic Bactria now i want the protein sequences than i will blast it with human proteome. ...
written 21 months ago by flavia0

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