User: Titus

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Titus910
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910
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9 months, 4 weeks ago
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3 years, 6 months ago
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Posts by Titus

<prev • 253 results • page 1 of 26 • next >
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Comment: C: small rna length distribution
... ok may be just check with [fastq][1] if you have a correct nuclear acid repartition in your trimmed reads. [1]: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ...
written 13 months ago by Titus910
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Comment: C: Annovar result GT field
... I think you have multi variants at the some position , 0 is wild type if i remenber corretly, 1 the first variant possible etc ...
written 13 months ago by Titus910
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Comment: C: small rna length distribution
... Hi , How do your performed your trimming step with list of adaptor sequence ? What tool do you used ? Are you sure you can t have 32 bp RNA possible ? I was thinking in Piwi RNA for exemple . Best ...
written 13 months ago by Titus910
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Comment: C: bed graph and IGV
... hi , are you sure it's REF/saccer3.fa.fai and not REF/saccer3.fa or just REF/saccer3? Best ...
written 13 months ago by Titus910
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Comment: C: Get identical elements and index from 2 Arrays in Perl
... Hi , Your post don't have links with bio-informatics you should post it on [stackoverflow][1]. I still give you a link where you can find what you are looking for [Perl tuto][2]. [1]: https://stackoverflow.com/ [2]: https://www.tutorialspoint.com/perl/perl_arrays.htm ...
written 14 months ago by Titus910
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Comment: C: snpEff output gets zero results for synonymous SNPs
... Yes but as @SMK said you can do `grep -c 'synonymous_variant' snpEffoutput.vcf` ...
written 14 months ago by Titus910
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Comment: C: snpEff output gets zero results for synonymous SNPs
... Can you show the command line you use , and part of your output file snpEffoutput.vcf ? Best ...
written 14 months ago by Titus910
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Comment: C: Question on patterns search in DNA sequences
... Ok so , seaching pattern in databases ? genomes ? I try blast accept R and . ...
written 15 months ago by Titus910
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Comment: C: where is parameter of significant level to call copynumber on 'CNVkit'???
... Hi , You have options here [in CNVkint][1] listed like --drop-low-coverage with whom you can play. Best [1]: https://cnvkit.readthedocs.io/en/stable/germline.html ...
written 15 months ago by Titus910
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Comment: C: Question on patterns search in DNA sequences
... Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about [blastx][1] [1]: https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastx&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome ...
written 15 months ago by Titus910

Latest awards to Titus

Commentator 13 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Popular Question 21 months ago, created a question with more than 1,000 views. For Looking for wig base coverage file for hg19
Commentator 2.8 years ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 2.9 years ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Centurion 3.0 years ago, created 100 posts.
Supporter 3.1 years ago, voted at least 25 times.
Appreciated 3.2 years ago, created a post with more than 5 votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 3.2 years ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Rising Star 3.3 years ago, created 50 posts within first three months of joining.
Scholar 3.4 years ago, created an answer that has been accepted. For C: finding homologs in human
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For C: where to find a list of often mutated or lost regions in cancers
Scholar 3.4 years ago, created an answer that has been accepted. For C: finding homologs in human

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