User: Titus

gravatar for Titus
Titus890
Reputation:
890
Status:
Trusted
Location:
Last seen:
1 week, 3 days ago
Joined:
2 years, 5 months ago
Email:
t*************@gmail.com

Posts by Titus

<prev • 253 results • page 1 of 26 • next >
0
votes
0
answers
84
views
0
answers
Comment: C: small rna length distribution
... ok may be just check with [fastq][1] if you have a correct nuclear acid repartition in your trimmed reads. [1]: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ...
written 19 days ago by Titus890
0
votes
0
answers
87
views
0
answers
Comment: C: Annovar result GT field
... I think you have multi variants at the some position , 0 is wild type if i remenber corretly, 1 the first variant possible etc ...
written 20 days ago by Titus890
0
votes
0
answers
84
views
0
answers
Comment: C: small rna length distribution
... Hi , How do your performed your trimming step with list of adaptor sequence ? What tool do you used ? Are you sure you can t have 32 bp RNA possible ? I was thinking in Piwi RNA for exemple . Best ...
written 20 days ago by Titus890
3
votes
0
answers
150
views
0
answers
Comment: C: bed graph and IGV
... hi , are you sure it's REF/saccer3.fa.fai and not REF/saccer3.fa or just REF/saccer3? Best ...
written 4 weeks ago by Titus890
0
votes
2
answers
201
views
2
answers
Comment: C: Get identical elements and index from 2 Arrays in Perl
... Hi , Your post don't have links with bio-informatics you should post it on [stackoverflow][1]. I still give you a link where you can find what you are looking for [Perl tuto][2]. [1]: https://stackoverflow.com/ [2]: https://www.tutorialspoint.com/perl/perl_arrays.htm ...
written 7 weeks ago by Titus890
0
votes
0
answers
119
views
0
answers
Comment: C: snpEff output gets zero results for synonymous SNPs
... Yes but as @SMK said you can do `grep -c 'synonymous_variant' snpEffoutput.vcf` ...
written 8 weeks ago by Titus890
0
votes
0
answers
119
views
0
answers
Comment: C: snpEff output gets zero results for synonymous SNPs
... Can you show the command line you use , and part of your output file snpEffoutput.vcf ? Best ...
written 8 weeks ago by Titus890
0
votes
1
answer
119
views
1
answers
Comment: C: Question on patterns search in DNA sequences
... Ok so , seaching pattern in databases ? genomes ? I try blast accept R and . ...
written 9 weeks ago by Titus890
0
votes
0
answers
51
views
0
answers
Comment: C: where is parameter of significant level to call copynumber on 'CNVkit'???
... Hi , You have options here [in CNVkint][1] listed like --drop-low-coverage with whom you can play. Best [1]: https://cnvkit.readthedocs.io/en/stable/germline.html ...
written 9 weeks ago by Titus890
0
votes
1
answer
119
views
1
answers
Comment: C: Question on patterns search in DNA sequences
... Your pattern doesn't looks like DNA you should describe more your question. Maybe you speak about [blastx][1] [1]: https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastx&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome ...
written 9 weeks ago by Titus890

Latest awards to Titus

Commentator 29 days ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Popular Question 8 months ago, created a question with more than 1,000 views. For Looking for wig base coverage file for hg19
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Centurion 22 months ago, created 100 posts.
Supporter 2.0 years ago, voted at least 25 times.
Appreciated 2.2 years ago, created a post with more than 5 votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 2.2 years ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Rising Star 2.2 years ago, created 50 posts within first three months of joining.
Scholar 2.3 years ago, created an answer that has been accepted. For C: finding homologs in human
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For C: where to find a list of often mutated or lost regions in cancers
Scholar 2.3 years ago, created an answer that has been accepted. For C: finding homologs in human

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 639 users visited in the last hour