User: Titus

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Titus670
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670
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11 hours ago
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Posts by Titus

<prev • 207 results • page 1 of 21 • next >
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Comment: C: Aligning Contigs of various Mtb strains to a reference genome and get the varian
... I'm not sure to understand it correctly, what do you mean by in the overlapping regions of the contigs ? Because you need an overlap to compare them :) ...
written 13 hours ago by Titus670
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Comment: C: why is there still duplication after extracting aligned read exactly 1 time?
... Do you have an example of read ? Could it be reads aligned in 2 different part of the genome ? ...
written 18 hours ago by Titus670
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Comment: C: Aligning Contigs of various Mtb strains to a reference genome and get the varian
... You just ha to put your scaffold has fasta format , don't you think ? ...
written 1 day ago by Titus670
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Comment: C: Aligning Contigs of various Mtb strains to a reference genome and get the varian
... Yes to me you just have to align it to a "classic" manner. Maybe you have to modify a bit the insertion score if you have big insertion due to the variability of your samples. ...
written 1 day ago by Titus670
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Comment: C: Aligning Contigs of various Mtb strains to a reference genome and get the varian
... I think you can consider scaffolds as "Big reads" ...
written 1 day ago by Titus670
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Comment: C: Masking short sequences between gaps in genome assembly
... When you say masking do you mean remove it ? ...
written 7 days ago by Titus670
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Comment: C: ATAC-seq fragment length distribution
... Ok i taught it could explain the differences ... ...
written 8 days ago by Titus670
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Comment: C: ATAC-seq fragment length distribution
... So you are with data with hi heterogeneity/ high rearrangement because of cancer cells , did you check with for example IGV the coverage of one insertion ? ...
written 8 days ago by Titus670
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Comment: C: ATAC-seq fragment length distribution
... Hi , There is few question to ask ; -is your sequencing is good ? ( high coverage of you insertion ? ) -is your model organism got a "complete" genome ref ? ( correct assembly? high concentration of TE/ high genome dynamic ? ) ...
written 8 days ago by Titus670
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Answer: A: Why is HGVS notation not available for some variants?
... I think it' because your variant is the intron part, introns are not composing the cDNA. ...
written 12 days ago by Titus670

Latest awards to Titus

Commentator 9 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Centurion 11 months ago, created 100 posts.
Supporter 13 months ago, voted at least 25 times.
Appreciated 15 months ago, created a post with more than 5 votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Rising Star 15 months ago, created 50 posts within first three months of joining.
Scholar 17 months ago, created an answer that has been accepted. For C: finding homologs in human
Teacher 17 months ago, created an answer with at least 3 up-votes. For C: where to find a list of often mutated or lost regions in cancers
Scholar 17 months ago, created an answer that has been accepted. For C: finding homologs in human

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