User: Titus

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Titus580
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Posts by Titus

<prev • 188 results • page 1 of 19 • next >
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Comment: C: Need help to understand mutalyzer variant desciption
... Ok my bad you right. Thank you ...
written 2 days ago by Titus580
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Comment: C: Mutation position in COSMIC
... It seems you discovered a bug :) I checked on hg19 and it's looks like a G on this position but your gene doesn't exist on hg19 ... what a mess .. ...
written 7 days ago by Titus580
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Comment: C: Need help to understand mutalyzer variant desciption
... ok so that make sens, and at the end this link : https://mutalyzer.nl/name-checker?description=NM_001258271.1%3Ac.1484delC work because CDS for position 1484 are the same between the 2 NM. Thank you for the answer it help :) Do you have an idea for the second part of the question ? Best ...
written 7 days ago by Titus580
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Comment: C: Need help to understand mutalyzer variant desciption
... Thank you Emily, I got an error with https://mutalyzer.nl/name-checker?description=NM_001258271.1%3Ac.1682delC so i looked to https://mutalyzer.nl/name-checker?description=NM_001258271.1%3Ac.1682del and it works but if i look the genomic region it's not the same (no presence of the poly C). I saw ...
written 8 days ago by Titus580
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Need help to understand mutalyzer variant desciption
... He there , I was checking my cDNA annotation (annotates by VEP ) on web and i agreed in lot of point with mutalyser until this example concerning this variant NM_000249.3:c.1484delC ( https://mutalyzer.nl/name-checker?description=NM_000249.3%3Ac.1484delC ) (with genomic position on hg19 : chr3-37 ...
snp written 8 days ago by Titus580 • updated 7 days ago by jfjlaros10
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Comment: C: BWA error [bns_restore_core] Parse error reading ref.fa.amb- After and despite r
... ***Should I concatenate only chr1-22, X, Y, M?*** What did concatenated plus that ? Sure you have to concatenated only that ! How did syou concatenated it by the way ? I get my hg19 on ucsc like downloading ref chromosome by chromosome and concatenated them ...
written 9 days ago by Titus580
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Comment: C: gene expression data for subtype cancer
... may be that : https://www.ncbi.nlm.nih.gov/sra/?term=nasopharyngeal+RNA-seq https://www.ncbi.nlm.nih.gov/sra/?term=stomach+RNA-seq ...
written 10 days ago by Titus580
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Comment: C: BWA error [bns_restore_core] Parse error reading ref.fa.amb- After and despite r
... You should download your hg19.fa and re-index it. I never had to remove space in hg19.fa ... ...
written 10 days ago by Titus580
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Comment: C: For cancer classification, can I use normal tissue sample of patients?
... Ok so you bet that you will not find tumoral mutation in your control , isn't it ? I think you will find some anyway ... ...
written 10 days ago by Titus580
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Comment: C: For cancer classification, can I use normal tissue sample of patients?
... How are you sure you tissue is normal part ? What do you use to distinguish normal and tumoral tissue ? Is it the same organ ? How can you be sure it's the same part of the tissue you take ? At the end best think will be to compare to an other normal patient to check if in the same tissue there ...
written 12 days ago by Titus580

Latest awards to Titus

Commentator 3 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Centurion 5 months ago, created 100 posts.
Supporter 7 months ago, voted at least 25 times.
Appreciated 9 months ago, created a post with more than 5 votes. For C: BWA: Why paired reads mapped to different chromosome?
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: BWA: Why paired reads mapped to different chromosome?
Rising Star 9 months ago, created 50 posts within first three months of joining.
Scholar 11 months ago, created an answer that has been accepted. For C: finding homologs in human
Teacher 11 months ago, created an answer with at least 3 up-votes. For C: where to find a list of often mutated or lost regions in cancers
Scholar 11 months ago, created an answer that has been accepted. For C: finding homologs in human

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