User: theobroma22

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theobroma22880
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Posts by theobroma22

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Comment: C: Intall local BLAST in Ubuntu
... See table 1 in this pub: https://www.ncbi.nlm.nih.gov/books/NBK52640/#!po=5.38462 ...
written 4 days ago by theobroma22880
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Answer: A: Clustering Softwares For Clustering Genes Expression Or Drugs Activity
... Mfuzz Bioconductor package. ...
written 8 days ago by theobroma22880
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Answer: A: Intall local BLAST in Ubuntu
... https://www.ncbi.nlm.nih.gov/guide/howto/run-blast-local/ ...
written 8 days ago by theobroma22880
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Answer: A: linear regression on EPICmethylation data
... Yes, a linear model is a linear model and can be used for any type of data like microarray, RNA-seq, methylation or other. The main issue is how to normalize your methylation data before putting it into a linear model. I'm not too keen on any bias or effects or the characteristics / properties of me ...
written 9 days ago by theobroma22880
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Answer: A: Using not significant differentially expressed genes
... SPIA: Signalling Pathway Impact Analysis Bioconductor package considers both Non-DE and DE genes to get significant pathways. Researchers usually defer to Gene Ontology and KEGG Orthology, but opposed to these types of enrichment analyses SPIA is a topology-based analysis, and so is considered more ...
written 9 days ago by theobroma22880
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Comment: C: Publicly-available Metabolomics Data
... Hi, I went to the MetaboLights on EBI and the screen is blocked with a transparent white screen such that I can't interact with the webpage. Do you know how to resolve this? ...
written 11 days ago by theobroma22880
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Answer: A: How to extract blast hits sequences in fasta format using BLAST+ running on wind
... You need to give more information to help you. First, you can use -help in the command line to see how to change the output, like the formatting style. Next, do you have only one result or many results per blast query? Do you want to extract the sequences in the Windows CMD terminal or input the fil ...
written 11 days ago by theobroma22880
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Answer: A: Publicly-available Metabolomics Data
... Thanks a lot! I also found MetabolomeXchange which has data as well. Here is the site: http://www.metabolomexchange.org/site/#/ ...
written 11 days ago by theobroma22880
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Publicly-available Metabolomics Data
... Does anyone know of a publicly-available database storing metabolomics datasets, particularly containing datasets for plants? NCBI GEO is an Omnibus mostly containing Gene Expression datasets like microarray, RNA-seq, CHIP, etc. and not so much individual metabolomics datasets. Are published metabol ...
metabolomics publicly-available database written 12 days ago by theobroma22880
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Answer: A: Venn diagram in R
... This post might be useful as well: https://www.biostars.org/p/260615/#260734 ...
written 12 days ago by theobroma22880

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