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User: theobroma22

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theobroma22 • 700
Reputation:
700
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4 months, 1 week ago
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Posts by theobroma22

<prev • 163 results • page 1 of 17 • next >
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Answer: A: Data mining for 300 genes from GEO
... I think you could a local Blastx program on the 300 amino acid sequences, and parse the gene IDs to a list to use with your GEOsearch. ...
written 8 hours ago by theobroma22 • 700
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Answer: A: Integrate Several Microarray and RNA-Seq Datasets
... Ultimately, you have to determine the best method by doing all available methods, and use the one that had the best result. ...
written 1 day ago by theobroma22 • 700
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Answer: A: How to use the qvalue function for multiple testing?
... You should also read the references provided in the qvalue package to get a better understanding of the theory, concept and terms like lambda and pi.0. ...
written 1 day ago by theobroma22 • 700
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Comment: C: How to import reference genome in CLC genomics workbench?
... Then it could be your license agreement terms? ...
written 1 day ago by theobroma22 • 700
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Answer: A: LOCAL BLAST evalue problem
... Try: 1e-5, if not, for some reason that option may not be available for your blastx search...it could be a bug so contact the help desk. ...
written 1 day ago by theobroma22 • 700
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Answer: A: How to import reference genome in CLC genomics workbench?
... When I used CLC workbench this was not an option. Unless they've released an updated version, you can refer to the user manual on how to do this. ...
written 1 day ago by theobroma22 • 700
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Comment: C: Density plot parameters in minfi package
... You could also say the Y-axis is the methylation and unmethylation values. I recommend you to read this paper: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btu049 ...
written 1 day ago by theobroma22 • 700
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Comment: C: Density plot parameters in minfi package
... On page 7 of the user manual it says that it's the read and green channel measurements of the samples. So, it must be light intensity. ...
written 2 days ago by theobroma22 • 700
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Comment: C: Density plot parameters in minfi package
... Is this not what you see / get? ...
written 3 days ago by theobroma22 • 700
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Comment: C: Density plot parameters in minfi package
... The manual says that it represents the raw, or unprocessed, Red and Green channel intensity values of the RGset. This is helpful to detect samples that may have issues or have failed. ...
written 3 days ago by theobroma22 • 700

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Scholar 6 weeks ago, created an answer that has been accepted. For A: Creating a targets matrix
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Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Creating a targets matrix
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Scholar 10 weeks ago, created an answer that has been accepted. For A: Creating a targets matrix
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Scholar 3 months ago, created an answer that has been accepted. For A: Creating a targets matrix
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Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Creating a targets matrix
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