User: belinda-k

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belinda-k0
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Posts by belinda-k

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How does Popoolation deal with heterozygous SNPs?
... Dear all, I am currently working with pooled RAD-seq data and used Popoolation for SNP calling etc. I know the software has its own built-in method to call SNPs but I was wondering how it accounts for heterozygous SNPs?! Unfortunately, I cannot find information about it online.... Any help would b ...
pooling snp popoolation written 5 months ago by belinda-k0
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How meaningful is GO term enrichment of SNP outliers when only a small proportion could be annotated?
... Dear all, I was aiming to identify outlier loci under selection for populations of a South African bee species using RAD-Seq. Overall, I got 1,119 outliers using various outlier approaches. However, I was able to annotate only a small proportion (12 %, i.e. 136) in BLAST2GO and even less could be as ...
go term enrichment outlier outliers snp annotation written 16 months ago by belinda-k0
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Go annotation/ Blast2GO: Why can RefSeq mRNA accession numbers not be associated with GO terms?
... Dear all, I successfully used BLAST2Go (blastx under default settings) to obatin gene annotations (gene identifiers) for my list of candidate sequences under selection. However, all my Blast hits are predicted from mRNA sequences, i.e. I only obtain RefSeq mRNA accession numbers as results. When I ...
go term annotation refseq blast2go written 23 months ago by belinda-k0
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Lositan with pools including individuals from different populations
... Dear all, I am interested in using Lositan for detecting loci under selection in populations of Rediviva longimanus bees. In particular I am interested in identifying regions under selection that are related to variation in leg length between the bee populations (presumably an adaptation to variati ...
lositan fst outlier pooled data selection written 2.1 years ago by belinda-k0 • updated 2.1 years ago by Biostar ♦♦ 20

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