User: BehMah

gravatar for BehMah
BehMah30
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30
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New User
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Last seen:
2 days, 17 hours ago
Joined:
1 year, 10 months ago
Email:
e**********@gmail.com

Posts by BehMah

<prev • 37 results • page 1 of 4 • next >
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Comment: C: How To Fetch Exon Sequence From Genomic Coordinates
... Ignore my last comment. I sorted it out thank you ATpoint :) ...
written 6 months ago by BehMah30
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Comment: C: How To Fetch Exon Sequence From Genomic Coordinates
... Thanks caggtaagtat! There is no assemble/annotation for rat (rnor 4) in biomart. There is just rnor 6 available :( ...
written 6 months ago by BehMah30
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Comment: C: How To Fetch Exon Sequence From Genomic Coordinates
... Thank you ATpoint. Sorry for Bedtools which was type error ;) I will give it a go. Just wondering if there there a way to get a single exon sequence (joint multiple exons) so I get only one sequence per each interval ? something like below: because each interval contain multiple exons. THANKS FOR Y ...
written 6 months ago by BehMah30
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How To Fetch Exon Sequence From Genomic Coordinates
... Hi Everyone :) I have a list of genomic coordinates and want to get only exon sequence for them. I can get the whole sequence (exon+intron) by Bedrolls getfasta but I want JUST exon sequences. Thank you :) ...
gene rna-seq written 6 months ago by BehMah30 • updated 6 months ago by ATpoint11k
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Comment: C: How to do Differential Expression for developmental series for normalised values
... Really appreciate your time and advices. ...
written 10 months ago by BehMah30
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Comment: A: How to do Differential Expression for developmental series for normalised values
... Thanks again Kevin. I am using R for all the stats. I think to return pvalue foe each gene I should change aov(gene.ex ~ group, data = my_data) a bit. ...
written 10 months ago by BehMah30
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Comment: C: How to do Differential Expression for developmental series for normalised values
... My pipeline is a bit different from normal way because Im doing DE for some non-coding RNA that are different from normal DE pipelines so I need to do statistics in my own way as a result can't use cufflinks/diff or DEseq/edgeR. Does ANOVA give Pvalue per gene(row)? or does it just give overall pva ...
written 10 months ago by BehMah30
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Comment: C: How to do Differential Expression for developmental series for normalised values
... Thanks Kevin for your time and answer. Following tophat, I normalised reads by depth of library to obtain RPM for each sample. In ANOVA, does it give pvalue per gene ? Also if compare pairwise using Wilcoxon works then why doing ANOVA then ? ...
written 10 months ago by BehMah30
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How to do Differential Expression for developmental series for normalised values?
... Hi I have NORMALISED expression values (RPM) for developmental series and want to do differential expression. Does any one know how to do it. Thanks ...
R rna-seq written 10 months ago by BehMah30
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Comment: C: Regarding UCSC genome browser picture
... Thanks Joseph, very useful ...
written 10 months ago by BehMah30

Latest awards to BehMah

Popular Question 3 months ago, created a question with more than 1,000 views. For How to calculate RPM (reads per million mapped reads)?
Supporter 10 months ago, voted at least 25 times.
Popular Question 14 months ago, created a question with more than 1,000 views. For How to calculate RPM (reads per million mapped reads)?

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