User: melania 2282

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melania 228270
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Posts by melania 2282

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Comment: C: Haplotype association in case control studies
... Hi Kevin, thanks for your reply, I understand that I have to use Beagle out put but how ? Do you have an experience with this ? Thank you ...
written 6 weeks ago by melania 228270
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Haplotype association in case control studies
... Hi , As a part of my analyses, I used Haplotype association test from Beagle 3. The results were interstion, but the problem that if I want to take into accotunt cofactors (sex,age,BMI ...) I had to use the output fro beagle in R. This step was not clear at all for me, so does any one have an exp ...
beagle3 case-control snp written 7 weeks ago by melania 228270 • updated 7 weeks ago by Kevin Blighe56k
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Comment: C: Merging many files with having same columns with bash script
... I mean they are exactly same and no one has the header line more that one time. ...
written 8 weeks ago by melania 228270
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Comment: C: Merging many files with having same columns with bash script
... They are all outputs from PLINK, so they have all same structure ...
written 8 weeks ago by melania 228270
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Comment: C: Merging many files with having same columns with bash script
... I tried this solution but I still have a header line between merged files. My files are .txt space separated ...
written 8 weeks ago by melania 228270
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Comment: C: Merging many files with having same columns with bash script
... Thank you very much ...
written 8 weeks ago by melania 228270
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Comment: C: Merging many files with having same columns with bash script
... Ok I updated my post . Thanks ...
written 8 weeks ago by melania 228270
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Merging many files with having same columns with bash script
... Hi Please I would like to merge a big number of .txt files in one. They all have the same columns , how to merge and keep only the header from the first ? It's a big number of files so I think I will need to use xargs ?! These are examples of what I have in my files : CH SNP A1 A2 N ...
bash written 8 weeks ago by melania 228270 • updated 8 weeks ago by Pierre Lindenbaum127k
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Comment: A: OR in plink2 GLM
... Thanks Christopher ! ...
written 9 weeks ago by melania 228270
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OR in plink2 GLM
... Hi, I am using plink2 for my analysis, I used 2 functions : --glm and --glm interaction I have case control data, but I can't understand the meaning of the OR with plink under additive model, what is the reference? OR of which subjects against which subjects ? ! The same for OR int ...
plink snp written 9 weeks ago by melania 228270

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