User: melania 2282

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melania 228230
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Posts by melania 2282

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Phasing with SHAPEIT
... Hi Kevin, It's a genotyping data from Illumina chip, Its 37 buit but I did the liftover to 38. Firstly I run the check command with shapeit to compare my data to reference panel (1000 genomes) and this step infom me that a lot of SNPs (for example for chr1 more 30000 will be excluded...) Thank you ...
written 6 hours ago by melania 228230
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Comment: C: Phasing with SHAPEIT
... thank you I will try this ...
written 1 day ago by melania 228230
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Phasing with SHAPEIT
... Hi, I am trying to phase genotyping data (Plink format file) for imputation later. But I have an alignement problem between my data and the refernce data set , because of it the most of my SNPs are excluded ... Is there any thing to do to avoid losing data ? ...
snp written 1 day ago by melania 228230
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Imputation from multiple reference panels softwares
... Hello , Is it possible with "Beagle 5.1" to take more than one phased refernce panel for phasing and imputation ? I have two phased refernce panels and want to use them both If not do you now any other sofware doing this ? Thank you very much ...
snp written 2 days ago by melania 228230 • updated 2 days ago by Kevin Blighe52k
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Comment: C: For loop parallelisation
... Many thanks Kevin it's very usefull for me ! ...
written 10 days ago by melania 228230
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Comment: C: For loop parallelisation
... Thank you Kevin, so I can have the output as data.frame or list ? ...
written 11 days ago by melania 228230
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Comment: C: For loop parallelisation
... Thank you I will try this ...
written 11 days ago by melania 228230
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Comment: C: For loop parallelisation
... Thank you Kevin, I edited my post to explain better the objective of my code ...
written 11 days ago by melania 228230
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For loop parallelisation
... Hello, please I need your help to make this loop works, its a permutation+metaanlysis on two sets of data, but i have an error message showing I need **foreach object**, The idea is to get the results of N permutations (n.iter in my code) of the meta-anlysis of two sets of data, the association mod ...
R written 12 days ago by melania 228230
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Comment: A: Permutation using Plink
... Hi I am in the same situation, is there any to have a mtric with pvalue by SNP for each permutation with a permutation matrix. With plink we can have only fstatistics and now way to have the permutation matrix Thank you ...
written 4 weeks ago by melania 228230

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