User: groupelmarwolf
groupelmarwolf • 0
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Posts by groupelmarwolf
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... Perfect ! Works like a charm ! :) Thanks for the excellent advice. ...
written 3.7 years ago by
groupelmarwolf • 0
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... Thanks Devon for your response !
I am trying to plot Pol2 ChIP Seq but sorted for histone marks. So I have a BED file(or bedGraph) with histone mark tags in the 4th column. I would like to make a heat map of Pol2 (so i take the Pol2 ChipSeq bam file, sorted and indexed as per the chromosome numbe ...
written 3.7 years ago by
groupelmarwolf • 0
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... I am having a scored bed file with weighted values in the 4th column. I want to use this scored file to as a sorting parameter for another .bam file. However, the input to computeMatrix operation allows only bigWig files to be used in -S option...and creating bigWig files required indexing based on ...
written 3.7 years ago by
groupelmarwolf • 0
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3.7 years ago by
Devon Ryan ♦ 98k
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... Nothing. It gives me the same output.
But when I give smaller regionBodyLength, it works.
Maybe I should have played around a bit more before posting :/
Thanks for super quick response. ...
written 3.9 years ago by
groupelmarwolf • 0
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... I tried to create a heat map using computeMatrix reference-point which gave excellent result:
computeMatrix reference-point -a 2500 -b 2500 -bs 5 -p max --sortRegions no -R /home/Data/reference/RefSeq_All.BED -S loucy_input_sorted.bw -out input_sorted_loucy_wg.txt.gz
plotHeatmap -m input_ ...
written 3.9 years ago by
groupelmarwolf • 0
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