User: dimitrischat

gravatar for dimitrischat
dimitrischat60
Reputation:
60
Status:
Trusted
Location:
Last seen:
3 days, 20 hours ago
Joined:
2 years ago
Email:
d***********@gmail.com

Posts by dimitrischat

<prev • 58 results • page 1 of 6 • next >
2
votes
0
answers
97
views
0
answers
juicer.sh problem !
... Trying to run sample files from here: https://github.com/aidenlab/juicer/wiki/Installation , but it returns this problem: (-: /home/app/Desktop/apps/Juicer/scripts/splits/HIC003_S2_L001_001.fastq.gz.sam created successfully. awk: /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blackl ...
rna-seq written 23 days ago by dimitrischat60
2
votes
1
answer
84
views
1
answer
.mcool to .hic
... Hi. I am trying to work out a pipeline for hi-c data analysis. https://hms-dbmi.github.io/hic-data-analysis-bootcamp/#1 Though i would prefer to use Juicebox for visualization. I am at the point where i have .mcool file (cooler) and i need .hic file so i can load it in Juicebox. Anyone knows how? ...
rna-seq written 23 days ago by dimitrischat60 • updated 23 days ago by Gautier Richard230
0
votes
1
answer
189
views
1
answers
Comment: C: how to install Juicer hi-c
... thanks but the problem was that the script was looking for that file in some other place different than the "installation" folder which was weird. but that is fixed ...
written 26 days ago by dimitrischat60
0
votes
1
answer
189
views
1
answers
Comment: C: how to install Juicer hi-c
... thanks a lot. that did the trick. now it appears to have another problem. "awk: cannot open /home/app/Desktop/apps/Juicer//scripts/common/chimeric_blacklist.awk (No such file or directory)" edit: so i downloaded the file using this in chrome : # Core Juicer scripts from github in chrome : https://s ...
written 4 weeks ago by dimitrischat60
0
votes
1
answer
189
views
1
answers
Comment: C: how to install Juicer hi-c
... wow, thank you so much for the help. But i think (?) i did it with these steps : > cd /home mkdir references; cd references wget > https://s3.amazonaws.com/juicerawsmirror/opt/juicer/references/Homo_sapiens_assembly19.fasta > wget > https://s3.amazonaws.com/juicerawsmirror/opt/juicer/re ...
written 4 weeks ago by dimitrischat60
4
votes
1
answer
189
views
1
answer
how to install Juicer hi-c
... https://github.com/aidenlab/juicer Some help on how to install this software on ubuntu. I downloaded it run through terminal but i get this error : "/opt/juicer/restriction_sites/hg19_MboI.txt does not exist. It must be created before running this script." Where do i find this file ? Is there ...
chip-seq written 4 weeks ago by dimitrischat60
0
votes
0
answers
154
views
0
answers
Comment: C: Chrom3d Bead color
... ![chimera][1].....using the chrom3d then you use the chimera program, i know you can change the colors. but at first the program gives an output of an image with different coloring. what each color represents? [1]: https://ibb.co/7grk1VQ ...
written 11 weeks ago by dimitrischat60
0
votes
0
answers
154
views
0
answers
Comment: C: Chrom3d Bead color
... https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1146-2 ...
written 11 weeks ago by dimitrischat60
0
votes
0
answers
154
views
0
answers
Chrom3d Bead color
... "...each bead represents a genomic domain" thats what i read in Nature post about the Chrom3d. But i couldnt find anything about which domain is each color? ...
chip-seq written 12 weeks ago by dimitrischat60
0
votes
2
answers
329
views
2
answers
Comment: C: Deseq2 Shrinkage or no?
... Thank you very much for the answer ( that didnt involve ironic comments ) ! ...
written 4 months ago by dimitrischat60

Latest awards to dimitrischat

Popular Question 5 days ago, created a question with more than 1,000 views. For from txt to bed
Popular Question 4 weeks ago, created a question with more than 1,000 views. For from txt to bed
Popular Question 3 months ago, created a question with more than 1,000 views. For Editing Bed file
Popular Question 7 months ago, created a question with more than 1,000 views. For from txt to bed
Popular Question 7 months ago, created a question with more than 1,000 views. For Editing Bed file
Supporter 15 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 736 users visited in the last hour