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Posts by shinobee
... Over- representation methods compare sets of genes annotated to pathways to a list of those genes that are significantly deferentially expressed (DE) between two phenotypes. Enrichment methods employ a “soft” version of over-representation based on a summary statistic to characterize the level of di ...
... I couldn't find a clear solution how to prepare microarray data to analyze it. I have 2 examples: 1. install.packages("plsgenomics") library("plsgenomics") data(Colon) data<-t(Colon$X) rownames(data)<-Colon$gene.names grp<-Colon$Y grp = as.factor(grp) If we c ...
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