User: rororo

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rororo0
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Posts by rororo

<prev • 26 results • page 1 of 3 • next >
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Comment: C: Gff to genbank - feature is missing
... this is the script I posted above ...
written 13 months ago by rororo0
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Comment: C: Gff to genbank - feature is missing
... as soon as the 25,000 entries are read and returned, seqret starts from the beginning and returns the same sequences again and again ...
written 13 months ago by rororo0
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Comment: C: Gff to genbank - feature is missing
... thanks for your help. Unfortunately, seqret does not stop converting - the file just gets bigger and bigger. Artemis freezes when opening the gff-file ...
written 13 months ago by rororo0
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Comment: C: Gff to genbank - feature is missing
... sorry, I clearified the source! ...
written 13 months ago by rororo0
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Comment: A: Gff to genbank - feature is missing
... I have 25,000 entries. So I need an automatic way! ...
written 13 months ago by rororo0
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Comment: C: Gff to genbank - feature is missing
... `source` in the `FEATURES` table FEATURES Location/Qualifiers source 1..5028 /organism="Saccharomyces cerevisiae" /db_xref="taxon:4932" /chromosome="IX" /map="9" ...
written 13 months ago by rororo0
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Gff to genbank - feature is missing
... I want to predict genes from my organism of interest using `augustus`. I therefore have my assembly, as well as a gff3 file. I want to train augustus using my dataset using `etraining`. I therefore need a genbank file. I found [link][1] with the following script to convert gff+fasta to genbank, sin ...
gff3 augustus dna genbank bioinformatics written 13 months ago by rororo0 • updated 11 months ago by Biostar ♦♦ 20
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Microscope/Genoscope RESTful API
... Does anyone know how to download ('export') all files from one organism on the Microscope/Genoscope platform? They offer a REST API interface but there is no manual. this is how the site (for whatever organism is chosen) looks like: https://www.genoscope.cns.fr/agc/microscope/search/exportForm.php? ...
rest genoscope api databases mage written 14 months ago by rororo0
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Comment: C: SRAdb: Search full text in study_type
... NCBI does not mention SRA ...
written 16 months ago by rororo0
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SRAdb: Search full text in study_type
... I want to search the entire SRA using the SRAdb package. Specifically, I want to get all accession number of Metagenomes (as study_type) with "enrichment culture" (full text search) The SRAdb manual unfortunately only shows either how to display all study_types or the full text search. ...
sra bioconductor R written 16 months ago by rororo0

Latest awards to rororo

Popular Question 13 months ago, created a question with more than 1,000 views. For List of all GO terms
Popular Question 20 months ago, created a question with more than 1,000 views. For Tool for calculating sequence statistic values (e.g. N50) for multiple bins

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