User: bwczech

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bwczech60
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Posts by bwczech

<prev • 59 results • page 1 of 6 • next >
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Comment: C: Comparison of variant distribution between chromosomes
... I have got my own VCF files that contains information about InDels and VCF (also annotated) and I want to do some comparison between chromosomes. It is not a human genome. ...
written 1 day ago by bwczech60
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Comment: C: Comparison of variant distribution between chromosomes
... I want to compare distribution of SNP -- randomness, some patterns associated with chromosome ...
written 2 days ago by bwczech60
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Comparison of variant distribution between chromosomes
... Hi, Do you know any idea how to do comparison of SNPs and InDels distribution between chromosomes? I know, I should take account a different chromosomes size. I have calculated number of SNPs for each chromosomes as well as number of InDels. Should I take account into size of indels? Do you have an ...
vcf comparison distribution written 3 days ago by bwczech60
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Pseudoautosomal regions in cow
... Hi, I have found a paper related to Pseudoautosomal regions (PAR1 and PAR2) on X and Y chromosomes ([https://www.journalofdairyscience.org/article/S0022-0302(19)30102-X/pdf][1]). Could you tell me how to determine exact coordinates of PAR1 and PAR2 on X and Y chromosomes? Thank you in advance. ...
sex par pseudoautosomal written 4 days ago by bwczech60
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Comment: C: Number of genomes sequences in NCBI
... Thank you, but how I can I check number of genome available for Mammals? In this file there is no field that I can use for filtering Mammals... ...
written 6 days ago by bwczech60
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Number of genomes sequences in NCBI
... Hi, Could you tell me how can I check number of organisms for which full genome sequences are available within NCBI? Also I would like to check how many mammals genomes are available in NCBI. Thank you in advance. ...
genome ncbi written 6 days ago by bwczech60 • updated 5 days ago by vkkodali910
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Comment: C: pbalign does not produce output
... The command is: pbalign 1529-13.subreads.bam ../Canu/1529-13/1529-13.contigs.fasta ../pbalign/1529-13/1529-13.aligned.bam Head of `1529-13.subreads.bam` is (after converting to sam): ``` m171229_125441_42242_c101415532550000001823309602281896_s1_p0/133/0_4918 4 * 0 25 ...
written 10 days ago by bwczech60 • updated 10 days ago by RamRS20k
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pbalign does not produce output
... Hi, During run pbalign, I see that pbalign does not produce output. I tried different options — print to stdout, to file, by tmp files and that only creates empty file. It seems that pbalign (0.3.2) does not align my files. I also tried to run blasr and there is the same problem. The command is: ...
pbalign written 10 days ago by bwczech60
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Comment: C: Samtools problem with running (Conda)
... I am using Miniconda3 latest version from https://conda.io/en/latest/miniconda.html ...
written 10 days ago by bwczech60
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Comment: C: Samtools problem with running (Conda)
... still the same problem. I have tried to make a link in some directory associated with *.dylib files or copy between directories. Now I tried to install openssl=1.0.2p but still: dyld: Symbol not found: _stdscr Referenced from: /Users/bart/miniconda3/bin/samtools Expected in: /Users/ba ...
written 10 days ago by bwczech60

Latest awards to bwczech

Student 11 weeks ago, asked a question with at least 3 up-votes. For Convert two-column txt to multiple column csv
Popular Question 6 months ago, created a question with more than 1,000 views. For Cluster analysis for SNPs data in R
Popular Question 6 months ago, created a question with more than 1,000 views. For Comparing two columns and replace in R Package

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