User: arash.iranzadeh1980

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Posts by arash.iranzadeh1980

<prev • 17 results • page 1 of 2 • next >
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Comment: A: Tool to perform GSEA on mapped genes
... Thank you! The organism is not a model organism, and it is not available in any databases that these tools use. The genes are just predicted genes and their names are not available in databases. I just need software that performs the statistical test on my data, suppose I have 5 genes as a populatio ...
written 10 months ago by arash.iranzadeh198030
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Tool to perform GSEA on mapped genes
... Hi, I have a set of genes along with their respective GOs. Anyone can suggest me a tool or package to perform a gene set enrichment analysis (GSEA) on a subset of these genes that are ranked according to their p-values? Please suggest freely available software (not like blast2GO). I know I can do a ...
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Gene interaction and network analysis tools
... Hi, I am working on two populations of invasive and non-invasive bacterial samples. I have found hundreds of genes that are present only in invasive samples. The sequence and annotation of all genes are available. I want to investigate the pathways that these genes are involved. What tools do you s ...
gene network analysis written 14 months ago by arash.iranzadeh198030
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(Closed) Statistical test to find significantly different values among pairs
... Hi, I have some measurement values under control and case conditions: case control 10 3 1 2 3 1 2 6 4 1 3 14 10 8 2 2 2 6 1 23 2 11 25 5 What statistical tests are suitable to find rows with values that are significantly different? For example a test confirming that ther ...
significantly different values written 23 months ago by arash.iranzadeh198030
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How to convert tree in phylip format into newick format
... Hi, Anyone knows How to convert tree in phylip format into newick format? Thanks! ...
phylip to newick conversion written 24 months ago by arash.iranzadeh198030 • updated 22 months ago by neutrinoscientist0
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(Closed) Tutorial data for GenomeStudio
... Hi, I installed Illumina GenomeStudio. I want to practice with the software, any one knows where can I download a set of data including *idat, *bpm, *csv, and *cgt files? Thanks! ...
tutorial genome studio written 2.0 years ago by arash.iranzadeh198030 • updated 2.0 years ago by RamRS26k
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(Closed) GenomeStudio 2.0 login problem
... Hi, I downloaded GenomeStudio Software 2.0.3 Installer and installed the software, then I registered on Illumina and created a MyIllumina account. When I click on the GenomeStudio icon, it asks for MyIllumine account email and password, and when I insert my account information, the software gives ...
software error genome studio written 2.0 years ago by arash.iranzadeh198030 • updated 2.0 years ago by RamRS26k
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Any GWAS tool for bacteria?
... Hi, I have a vcf file containing 210000 variants (SNPs and INDELS) and 1480 individuals from streptococcus pneumonia bacterium. I need a tool to perform a GWAS on this set of variants. Any tool suggestion? ...
any gwas tool for bacteria? written 2.4 years ago by arash.iranzadeh198030 • updated 2.4 years ago by natasha.sernova3.7k
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SNP statistical analysis
... Hi, I am doing a genome wide association study on a series of SNPs. I have confronted many statistical tests like logistic regression, fisher exact test, association test, Chi square etc. Is there any good reference or reading materials for studying these tests on SNPs. I need examples with numerica ...
snp statistical analysis written 2.4 years ago by arash.iranzadeh198030 • updated 2.4 years ago by AlexRT10
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Comment: C: VCF file analysis to find genome wide association
... Thank you very much, seems useful. ...
written 2.5 years ago by arash.iranzadeh198030

Latest awards to arash.iranzadeh1980

Popular Question 13 months ago, created a question with more than 1,000 views. For Converting dot to json
Popular Question 13 months ago, created a question with more than 1,000 views. For How to convert tree in phylip format into newick format
Popular Question 23 months ago, created a question with more than 1,000 views. For Converting dot to json
Popular Question 23 months ago, created a question with more than 1,000 views. For VCF file analysis to find genome wide association
Popular Question 23 months ago, created a question with more than 1,000 views. For Tutorial data for GenomeStudio

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