User: arash.iranzadeh1980

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Posts by arash.iranzadeh1980

<prev • 22 results • page 1 of 3 • next >
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Comment: C: SARS Cov2 NGS data analysis pipeline
... Thank you very much for the link and tutorial! ...
written 8 days ago by arash.iranzadeh198030
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Comment: C: SARS Cov2 NGS data analysis pipeline
... Many thanks! Seems useful. ...
written 8 days ago by arash.iranzadeh198030
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SARS Cov2 NGS data analysis pipeline
... Hi, Anyone can introduce tools (pipelines) that are suitable for analysis of the coronavirus NGS data (Illumina MiSeq platform) including quality control, phylogeny and variant calling? Thanks! ...
sars cov2 data analysis pipeline written 8 days ago by arash.iranzadeh198030 • updated 8 days ago by Akshay Zawar10
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Comment: C: Thousands of significant SNPs
... Many thanks. QQ plot shows a great deviation. Please see below. I think it should be ok! What do you think? Any suggestions? https://ibb.co/Rgdxd05 ...
written 6 weeks ago by arash.iranzadeh198030
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Thousands of significant SNPs
... Hi, I have performed a GWAS between two genetically diverse bacterial populations and I found about 3000 significant SNP (p-value < 5e-8), I also found 120 SNPs with a p-value close to zero. About 500 genes harbor these significant SNPs. How to analyze these significant SNPs? Any suggestions for ...
gwas bacteria snp written 7 weeks ago by arash.iranzadeh198030 • updated 7 weeks ago by Asaf8.3k
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Comment: A: Tool to perform GSEA on mapped genes
... Thank you! The organism is not a model organism, and it is not available in any databases that these tools use. The genes are just predicted genes and their names are not available in databases. I just need software that performs the statistical test on my data, suppose I have 5 genes as a populatio ...
written 15 months ago by arash.iranzadeh198030
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Tool to perform GSEA on mapped genes
... Hi, I have a set of genes along with their respective GOs. Anyone can suggest me a tool or package to perform a gene set enrichment analysis (GSEA) on a subset of these genes that are ranked according to their p-values? Please suggest freely available software (not like blast2GO). I know I can do a ...
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Gene interaction and network analysis tools
... Hi, I am working on two populations of invasive and non-invasive bacterial samples. I have found hundreds of genes that are present only in invasive samples. The sequence and annotation of all genes are available. I want to investigate the pathways that these genes are involved. What tools do you s ...
gene network analysis written 18 months ago by arash.iranzadeh198030
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(Closed) Statistical test to find significantly different values among pairs
... Hi, I have some measurement values under control and case conditions: case control 10 3 1 2 3 1 2 6 4 1 3 14 10 8 2 2 2 6 1 23 2 11 25 5 What statistical tests are suitable to find rows with values that are significantly different? For example a test confirming that ther ...
significantly different values written 2.3 years ago by arash.iranzadeh198030
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How to convert tree in phylip format into newick format
... Hi, Anyone knows How to convert tree in phylip format into newick format? Thanks! ...
phylip to newick conversion written 2.3 years ago by arash.iranzadeh198030 • updated 2.2 years ago by neutrinoscientist0

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