User: juliuspasion1994

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Posts by juliuspasion1994

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Get Fasta file of a genome using only contig name?
... I was able to download the fasta of all the contigs I was looking for! However, is it also possible to download whole genome assembly directories of these bacterial strains given the contig names I posted earlier? ...
written 4 months ago by juliuspasion199410
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Comment: C: Get Fasta file of a genome using only contig name?
... Nice, I was just typing up my edit on how I think I could do it, thanks for confirming ...
written 4 months ago by juliuspasion199410
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Comment: A: Get Fasta file of a genome using only contig name?
... BBFO01000001.1 CP022915.1 Here are some examples. They are Genbank handles,and I would like the genomes in Fasta format. I'm thinking I can use wget and write a script that uses wget for each of the genomes in my list, since the contig names I just posted are part of the website address? ...
written 4 months ago by juliuspasion199410 • updated 4 months ago by RamRS28k
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Get Fasta file of a genome using only contig name?
... Hello, I was given a list of 2000+ unique contig names and I need to find out which bacterial genomes the contigs belong to, and download the whole genome of that bacteria for as many as I can. I can't think of any way to expedite this process except to search on NCBI each genome. Is there a faster ...
genome sequence written 4 months ago by juliuspasion199410
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How to prep MAFFT alignment files for use in R packages ape and pegas?
... Hello everyone, I have a single alignment file that I would like to analyze using the Tajima's D test in pegas. The alignment file is in Clustal format, and was generated using MAFFT. Within my file, I have alignments for every gene in the reference genome, aligned to the rest of the genomes in the ...
R pegas alignment population genetics written 10 months ago by juliuspasion199410
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Comment: C: Help working through Biostar's Handbook with Windows 7?
... Thank you Titus, I installed VirtualBox and am using Linux Mint now! ...
written 3.3 years ago by juliuspasion199410
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Help working through Biostar's Handbook with Windows 7?
... I bought the Biostar's Handbook and have been reading it, but I cannot work on many problems because the book is written for Windows 10 and I have Windows 7. I have tried to upgrade it but I keep running into errors that prevent the installation. While I resolve those problems, what software can I u ...
software error software written 3.3 years ago by juliuspasion199410 • updated 3.3 years ago by gandrescabrera80
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... I just purchased the book, but I have Windows 7. Can anyone help me download the right programs needed to work through the book that are available on Windows 7? ...
written 3.5 years ago by juliuspasion199410

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