User: koushikayaluri

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3 weeks ago
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4 years ago
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Posts by koushikayaluri

<prev • 17 results • page 1 of 2 • next >
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Comment: C: How to find the secreted protein tags
... So to be sure I need to get the fasta sequence of each gene in my Gene list and then I can find the signal peptides? ...
written 21 days ago by koushikayaluri40
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Comment: C: How to find the secreted protein tags
... Thank you! sure will check it. ...
written 21 days ago by koushikayaluri40
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Comment: C: How to find the secreted protein tags
... I mean to find the signal peptides from my gene list. ...
written 21 days ago by koushikayaluri40
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How to find the secreted protein tags
... I have found the Differentially expressed genes between breast cancer datasets using DESeq2 further I want to find the **secreted protein tags** for my Differentially expressed genes (DEGs) list. Does anyone have any idea about what tool or database I can use to accomplish this? Please let me know. ...
R next-gen protein rna-seq written 21 days ago by koushikayaluri40 • updated 6 days ago by Elisabeth Gasteiger1.9k
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Comment: C: How to find commonly differentially expressed genes between two conditions
... Thank you very much. I know it was not purely bioinfo question but I was stuck by the way of thought process. ...
written 29 days ago by koushikayaluri40
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Comment: C: How to handle duplicate row names in R
... Thank you very much it works now. ...
written 6 weeks ago by koushikayaluri40
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How to handle duplicate row names in R
... Hi all, I have some RNA-Seq data and I am planning to run DESeq analysis on them and I am facing an error when I am assigning the gene names as row names it says "duplicate row names". I don't want to remove any genes is there any way to work around it? Below is an example of my data `Countdata` ...
software error R alignment rna-seq written 6 weeks ago by koushikayaluri40 • updated 6 weeks ago by zx87549.9k
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Comment: C: How to do the data imputation of my protein expression data(values)
... Thank you will look into it. ...
written 15 months ago by koushikayaluri40
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How to do the data imputation of my protein expression data(values)
... I am currently working on a protein expression data of breast cancer where rows are my proteins (Refseq) and columns are my samples. I have 77 cancer affected samples, 3 replicates and 3 normal samples and have a lot of missing values. My data is normalized and contains log2 iTRAQ ratios of each sam ...
gene R next-gen rna-seq alignment written 15 months ago by koushikayaluri40
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Comment: C: What should I choose between a thesis and a project for masters in bioinformatic
... Thank you for your valuable suggestion. Will consider the pros and cons and choose one. ...
written 18 months ago by koushikayaluri40

Latest awards to koushikayaluri

Popular Question 12 months ago, created a question with more than 1,000 views. For How to find conserved regions from multiple sequence alignment
Popular Question 15 months ago, created a question with more than 1,000 views. For Count the number of sequences in fasta file using perl
Popular Question 18 months ago, created a question with more than 1,000 views. For Good university or country to study masters in bioinformatics
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Skills & qualities required to be a Bioinformatician

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