User: koushikayaluri
koushikayaluri • 40
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Posts by koushikayaluri
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... So to be sure I need to get the fasta sequence of each gene in my Gene list and then I can find the signal peptides? ...
written 21 days ago by
koushikayaluri • 40
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... Thank you! sure will check it. ...
written 21 days ago by
koushikayaluri • 40
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94
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... I mean to find the signal peptides from my gene list. ...
written 21 days ago by
koushikayaluri • 40
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5 follow
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... I have found the Differentially expressed genes between breast cancer datasets using DESeq2 further I want to find the **secreted protein tags** for my Differentially expressed genes (DEGs) list. Does anyone have any idea about what tool or database I can use to accomplish this? Please let me know.
...
written 21 days ago by
koushikayaluri • 40
• updated
6 days ago by
Elisabeth Gasteiger • 1.9k
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... Thank you very much.
I know it was not purely bioinfo question but I was stuck by the way of thought process. ...
written 29 days ago by
koushikayaluri • 40
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... Thank you very much it works now. ...
written 6 weeks ago by
koushikayaluri • 40
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261
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6 follow
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... Hi all,
I have some RNA-Seq data and I am planning to run DESeq analysis on them and I am facing an error when I am assigning the gene names as row names it says "duplicate row names". I don't want to remove any genes is there any way to work around it?
Below is an example of my data `Countdata`
...
written 6 weeks ago by
koushikayaluri • 40
• updated
6 weeks ago by
zx8754 ♦ 9.9k
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... Thank you will look into it. ...
written 15 months ago by
koushikayaluri • 40
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... I am currently working on a protein expression data of breast cancer where rows are my proteins (Refseq) and columns are my samples. I have 77 cancer affected samples, 3 replicates and 3 normal samples and have a lot of missing values.
My data is normalized and contains log2 iTRAQ ratios of each sam ...
written 15 months ago by
koushikayaluri • 40
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... Thank you for your valuable suggestion. Will consider the pros and cons and choose one. ...
written 18 months ago by
koushikayaluri • 40
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