User: theresa

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theresa10
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6 months ago
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1 year, 9 months ago
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t*************@icloud.com

Posts by theresa

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Answer: A: HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
... I am answering my own question here. Used 'ChIPseeker' in R/Bioconductor to annotate my peak file. 'Windows-formatted' text is no longer available for Mac versions of MS Office, so HOMER might protest. ho hum. https://bioconductor.org/packages/release/bioc/html/ChIPseeker.html ...
written 6 months ago by theresa10
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HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
... Greetings, I am able to run annotatePeaks.pl in HOMER on a ChIP-seq peak file, but in the annotated output, HOMER has changed my 'unique peak ID', which is problematic for downstream stuff I want to do. Can anyone help me? Problem detail below I have a MACS ChIP-seq peak file ("PeakFile.txt") ...
homer chip-seq written 6 months ago by theresa10 • updated 6 months ago by prakash530
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Answer: A: Error in GDCprepare in TCGAbiolinks
... tiagochst answered here: > https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/65 ...
written 17 months ago by theresa10

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