User: jawhar.saks

gravatar for jawhar.saks
jawhar.saks10
Reputation:
10
Status:
New User
Location:
France
Last seen:
4 months ago
Joined:
2 years, 3 months ago
Email:
j**********@gmail.com

Posts by jawhar.saks

<prev • 22 results • page 1 of 3 • next >
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Comment: C: VariantCalling with single sanger read
... By the way, our software outputs for each sanger file (.ab1) a folder with in it : - Plus.fasta - Minus.fasta - Plus_Wt.aln - Minus_WT.aln - Chromatogram And the conclusion files for the batch if a theorical position of mutation is given. ...
written 4 months ago by jawhar.saks10
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Answer: A: VariantCalling with single sanger read
... Hello, We developed an automatic software working on batches and allowing for optionnal conclusion files based on theorical mutation position following papers rules. IAGE Tools Analytics : A solution to detect SNP and INDELS from Sanger in CRISPR analysis workflow. [Video of the software.][1] ...
written 4 months ago by jawhar.saks10
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Comment: C: How can i get or generate Sanger .ab1 files?
... *UPDATE :* I found out a few sequence on another post but not enough to be representative here : https://www.biostars.org/p/274315/ ...
written 11 months ago by jawhar.saks10
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Comment: A: How To Call Snp From .Ab1 Files Of Sanger Sequencing?
... I've got a solution for this problem, mp me if you want. ...
written 11 months ago by jawhar.saks10
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Answer: A: Software to analyse mutations in sanger sequencing files
... Hello, I developped a workflow that does it automatically for whole batch and provide a conclusion suited to publications. Just mp me if you want to know about it. ...
written 11 months ago by jawhar.saks10
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How can i get or generate Sanger .ab1 files?
... Hello, I created a software working on abif batch files from Sanger sequencing. I want to test it on a big amount of data to hunt for bugs, and for that i need a lot of data. That's why i'm looking for `.ab1` files generator, or sample/anonymous `.ab1` files maybe. I would like to get them wi ...
sanger sample files ab1 generate written 11 months ago by jawhar.saks10
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Comment: C: How to get ambiguous sequence from ABIF file with perl ?
... I, tryed to do without that by using some software for the moment. But i'm still interested in achieving it. Is it possible to do it threw emboss or threw some python automatic module ? ...
written 2.2 years ago by jawhar.saks10
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Comment: C: PERL : How to do a local alignement with a matrix EDNAFULL (Smith-Waterman algor
... Well i tryed to install emboss first and i'm stuck i don't know how to proceed. I tryed to follow tutorials like [This one][1] or [This One][2] But couldn't get it installed, and for `Bio::Factory::EMBOSS` When i try to install it threw cpan with the command : `install Bio::Factory::EMBOSS ...
written 2.2 years ago by jawhar.saks10
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Comment: C: PERL : How to do a local alignement with a matrix EDNAFULL (Smith-Waterman algor
... This looks totally like it !! I'll try it tonight, thank you. ...
written 2.2 years ago by jawhar.saks10
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PERL : How to do a local alignement with a matrix EDNAFULL (Smith-Waterman algorythm)
... Hello everybody. I'm stuck on a problem and can't find a way out. Like said in the title i wish to do a local alignement with a EDNAFULL matrix (to be able to work with iupac extended code for Dna). I'd like to output an alignment. I'm working on a bigger code on perl, that's why i'm looking for ...
perl ednafull local alignment smith-waterman written 2.2 years ago by jawhar.saks10 • updated 2.2 years ago by Jean-Karim Heriche19k

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Popular Question 10 months ago, created a question with more than 1,000 views. For How to get ambiguous sequence from ABIF file with perl ?

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