User: ccma

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ccma0
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Posts by ccma

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How to get individual admixture fraction from microsatellite data
... Hey guys: Suppose there is a reference database of microsatellite data and the populations where the reference samples are from. Now, there is an individual sample with microsatellite data which is known mixed from the populations mentioned above. **How to get the fraction of each population of ...
ancestry admixture microsatellite written 4 months ago by ccma0 • updated 3 months ago by Biostar ♦♦ 20
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Answer: A: gVCF questions with "0" in the Alt field
... Thank you all. I am new to biostars. I don't known how to post my results properly either the table or the screenshot. I will try my best to illustrate this question. Fro example: "chr6 31324208 31324208 G 0 exonic HLA-B" The position is at : chromosome 6 ,start at 31324208 , end at 31324208 The ...
written 2.1 years ago by ccma0
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gVCF questions with "0" in the Alt field
... Recently I am using Annovar to annotate my gVCF file generated by GATK. I am confused with some lines: ![The gVCF file screenshot](C:\Users\macc\Desktop\gVCF.png) chr6 31324208 31324208 G 0 exonic HLA-B chr6 31324493 31324494 CA 0 exonic HLA-B chr6 31324494 31324497 AGGT 0 exonic HLA-B The Alt ...
gatk annovar written 2.1 years ago by ccma0

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