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Comment: C: Clipping primer after alignment
6.1 years ago by finswimmer 16k
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Clipping primer after alignment
bam clipping
updated 4.4 years ago by ▴ 30 • written 6.1 years ago by 16k
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1.3k
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Comment: C: How to generate consensus fasta uninterleaved from bam?
6.1 years ago by finswimmer 16k
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1.7k
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Comment: C: Generation of incorrect heterozygous calls after left normalization using bcftoo
6.1 years ago by finswimmer 16k
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1.7k
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Comment: C: Generation of incorrect heterozygous calls after left normalization using bcftoo
6.1 years ago by finswimmer 16k
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1.5k
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Comment: C: bcftools merge creates high missingness rate
6.1 years ago by finswimmer 16k
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1.1k
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Comment: C: multi sample vcf to data matrix
6.1 years ago by finswimmer 16k
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1.5k
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Comment: C: Consensus sequence from multiple BAM files on a single position
6.1 years ago by finswimmer 16k
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1.8k
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Comment: C: bedtool getfasta only reads the first line of my bedfile
6.1 years ago by finswimmer 16k
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1.6k
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Answer: A: 1000 Human Genomes Project Population Alignment Data
6.1 years ago by finswimmer 16k
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1.8k
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Comment: C: bedtool getfasta only reads the first line of my bedfile
6.1 years ago by finswimmer 16k
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1.7k
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Comment: C: Bam QC, GC content
6.1 years ago by finswimmer 16k
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1
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1.4k
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Comment: C: .bam mpileup mapping quality
6.1 years ago by finswimmer 16k
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1.3k
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Comment: C: Filtering for homozygous reference alleles
6.1 years ago by finswimmer 16k
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0
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1.3k
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Comment: C: how to extract just one fast sequence from a multiple sequence vcf?
6.1 years ago by finswimmer 16k
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5.0k
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Comment: C: Error: malformed header while uploading .vcf.gz files to Michigan imputation ser
6.2 years ago by finswimmer 16k
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3.5k
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Comment: C: Filtering GFF3 file
6.2 years ago by finswimmer 16k
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1
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1.3k
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Answer: C: bcftools merge heterozygous calls
6.2 years ago by finswimmer 16k
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1
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9.9k
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Comment: C: Snakemake input and wildcards
6.2 years ago by finswimmer 16k
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3.5k
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Comment: C: Filtering GFF3 file
6.2 years ago by finswimmer 16k
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1
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3.5k
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Comment: C: Filtering GFF3 file
6.2 years ago by finswimmer 16k
1
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1.4k
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Answer: A: Manifest and off target
6.2 years ago by finswimmer 16k
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1.1k
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Comment: C: bcftools merge heterozygous calls
6.2 years ago by finswimmer 16k
3
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1
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1.7k
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Comment: C: Running blast command line inside python script
6.2 years ago by finswimmer 16k
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2.5k
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Comment: C: Add tag to FORMAT tab of vcf
6.2 years ago by finswimmer 16k
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2.0k
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Comment: C: Pysam--how to check for empty results in fetch(region) of bam file
6.2 years ago by finswimmer 16k
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1.2k
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Comment: C: Merging SNV and DIV vcfs of the same Individual
6.2 years ago by finswimmer 16k
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6.1k
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Comment: C: bcftools merge duplicate names
6.2 years ago by finswimmer 16k
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1
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6.1k
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Comment: C: bcftools merge duplicate names
6.2 years ago by finswimmer 16k
4
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1
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5.6k
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Answer: A: Consensus reads from UMIs
6.2 years ago by finswimmer 16k
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3.4k
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Comment: C: Fasta extraction from bed file
6.2 years ago by finswimmer 16k
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5.2k
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Comment: C: bcftools and VCFTools consensus functionality both not working unless there are
6.2 years ago by finswimmer 16k
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1.6k
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Answer: A: How to remove all characters after a specific pattern?
6.2 years ago by finswimmer 16k
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1
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5.0k
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Comment: C: Remove line with awk in vcf.gz
6.2 years ago by finswimmer 16k
3
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1
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5.0k
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Answer: A: Remove line with awk in vcf.gz
6.2 years ago by finswimmer 16k
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2.2k
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Comment: C: Complementary strand in cluster generation
6.2 years ago by finswimmer 16k
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36k
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Comment: C: bcftools-merge for vcf files
6.2 years ago by finswimmer 16k
1
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1
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2.3k
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Answer: A: skipping column names using awk
6.2 years ago by finswimmer 16k
0
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1
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2.3k
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Comment: C: SAM file generation problem
6.2 years ago by finswimmer 16k
4
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1
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31k
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Answer: A: Creating workflows with snakemake and conda
6.2 years ago by finswimmer 16k
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1.8k
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Comment: C: BCF missing sample names
6.2 years ago by finswimmer 16k
1
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1
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36k
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Comment: C: bcftools-merge for vcf files
6.2 years ago by finswimmer 16k
0
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0
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1.3k
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Answer: A: Compare results of test pipelines with the ones from GIAB
6.2 years ago by finswimmer 16k
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1
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3.4k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
6.2 years ago by finswimmer 16k
3
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1
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36k
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Answer: A: bcftools-merge for vcf files
6.2 years ago by finswimmer 16k
0
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1
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1.8k
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Comment: C: BCF missing sample names
6.2 years ago by finswimmer 16k
2
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1
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2.9k
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Comment: C: Command line explain
6.2 years ago by finswimmer 16k
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1
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3.0k
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Answer: A: Amount of variants increased after bedtools subtract
6.2 years ago by finswimmer 16k
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0
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1.3k
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Comment: C: SNPEff missing annotations from VCF?
6.2 years ago by finswimmer 16k
4
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0
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16k
views
Answer: C: Error : Could not build fai index
6.2 years ago by finswimmer 16k
1,610 results • Page 3 of 33
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