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0
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0
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16k
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Comment: C: Error : Could not build fai index
6.2 years ago by finswimmer 16k
1
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0
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4.9k
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Comment: C: using GNU parallel for bwa mem and samtools
6.2 years ago by finswimmer 16k
0
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1
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1.3k
views
Comment: C: SNPEff missing annotations from VCF?
6.3 years ago by finswimmer 16k
3
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2
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2.9k
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Comment: C: Command line explain
6.3 years ago by finswimmer 16k
0
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0
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1.7k
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Comment: C: random selection of multi-sample vcf does not work
6.3 years ago by finswimmer 16k
4
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1
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2.4k
views
Answer: A: Bridge Amplification error rate and duplicates in NGS
6.3 years ago by finswimmer 16k
1
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0
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4.7k
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Answer: A: cut the sequence from fasta file
6.3 years ago by finswimmer 16k
0
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0
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2.2k
views
Answer: A: parsing gbk file to get fna file
6.3 years ago by finswimmer 16k
0
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0
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2.0k
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Comment: C: Getting different results from bedtools and samtools
6.3 years ago by finswimmer 16k
0
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0
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1.1k
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Comment: C: samtools having to use -A input option
6.3 years ago by finswimmer 16k
0
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1
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2.0k
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Comment: C: Getting different results from bedtools and samtools
6.3 years ago by finswimmer 16k
3
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0
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1.9k
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Comment: C: Unable to generate VCF
6.3 years ago by finswimmer 16k
0
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0
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2.4k
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Comment: C: How to remove duplicate fasta sequences from a file
6.3 years ago by finswimmer 16k
2
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1
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2.4k
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Answer: A: How to remove duplicate fasta sequences from a file
6.3 years ago by finswimmer 16k
2
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1
reply
2.1k
views
Answer: C: User error while using GATK SplitNcigarReads
6.3 years ago by finswimmer 16k
4
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1
reply
2.7k
views
Answer: C: Samtools mplileup detects wrong INDEL positions
6.3 years ago by finswimmer 16k
0
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1
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2.7k
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Comment: C: Samtools mplileup detects wrong INDEL positions
6.3 years ago by finswimmer 16k
2
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1
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1.8k
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Answer: C: unknown genotype in a vcf file
6.3 years ago by finswimmer 16k
0
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0
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1.9k
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Comment: C: missingoutputexception, snakemake after completing 95% analysis
6.3 years ago by finswimmer 16k
0
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0
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1.2k
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Comment: C: How do I get PyVCF to give me an error if the record it is fetching doesn't exis
6.3 years ago by finswimmer 16k
0
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0
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8.2k
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Comment: C: Issue With CRAM -> BAM -> FASTQ Conversion
6.3 years ago by finswimmer 16k
0
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0
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1.9k
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Comment: C: extract region from the bam file
6.3 years ago by finswimmer 16k
0
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1
reply
1.9k
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Comment: C: extract region from the bam file
6.3 years ago by finswimmer 16k
3
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0
replies
3.4k
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Answer: A: Column explanation for repeat database from UCSC
6.3 years ago by finswimmer 16k
3
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0
replies
5.1k
views
Answer: A: Using tabix to read a tsv.bgz with genomic coordinate in single column<chromosom
6.3 years ago by finswimmer 16k
0
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0
replies
1.1k
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Comment: C: How can i add the same sequence starting from the last of a sequence in a multi-
6.3 years ago by finswimmer 16k
0
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1
reply
3.3k
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Comment: C: How to find pattern matching over range of columns but not present in other colu
6.3 years ago by finswimmer 16k
1
vote
1
reply
4.3k
views
Comment: C: Manually calculate Minor Allele Frequency in this VCF
6.3 years ago by finswimmer 16k
1
vote
1
reply
9.8k
views
Comment: C: Error installing bcl2fastq 2.20 in make step - Ubuntu 18.04
6.3 years ago by finswimmer 16k
5
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1
reply
5.6k
views
Answer: C: Tabix on bed file can't parse
6.3 years ago by finswimmer 16k
0
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0
replies
1.5k
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Comment: C: bcftools view: index -R not better than -T
6.3 years ago by finswimmer 16k
0
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1
reply
3.3k
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Comment: C: Filtered a .vcf file based on id of a second file
6.3 years ago by finswimmer 16k
1
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1
reply
2.5k
views
Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
6.3 years ago by finswimmer 16k
0
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1
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2.5k
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Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
6.3 years ago by finswimmer 16k
11
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2
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23k
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Answer: A: extract and generate a VCF file with only "PASS"
6.3 years ago by finswimmer 16k
0
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0
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7.5k
views
Comment: C: Samtools: How to extract reads with MAPQ 0?
6.3 years ago by finswimmer 16k
0
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0
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2.1k
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Comment: C: Sorting an already sorted file with samtools reduced its size
6.4 years ago by finswimmer 16k
0
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0
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3.0k
views
Answer: A: Identifying unique SNPs between species
6.4 years ago by finswimmer 16k
2
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0
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3.7k
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Answer: A: Merge VCF files with diploid reference calls in different order for same positio
6.4 years ago by finswimmer 16k
4
votes
1
reply
2.1k
views
Answer: A: Triplet frequencies in human genome
6.4 years ago by finswimmer 16k
1
vote
0
replies
9.6k
views
Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
6.4 years ago by finswimmer 16k
3
votes
1
reply
9.6k
views
Answer: A: Removing homozygous reference genotypes from multi-sample vcf file
6.4 years ago by finswimmer 16k
1
vote
1
reply
9.6k
views
Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
6.4 years ago by finswimmer 16k
0
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0
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1.6k
views
Comment: C: -C 50 parameter MPILEUP
6.4 years ago by finswimmer 16k
1
vote
1
reply
2.5k
views
Comment: C: Error in SAM to BAM conversion
6.4 years ago by finswimmer 16k
2
votes
1
reply
3.4k
views
Answer: C: snpEff: Fatal error reading file the input VCF files and stop runing
6.4 years ago by finswimmer 16k
0
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0
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2.1k
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Comment: C: No reads in IGV at the positions indicated by the bed file
6.4 years ago by finswimmer 16k
2
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0
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3.6k
views
Answer: A: tabix to exclude chromosomes from vcf
6.4 years ago by finswimmer 16k
0
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1
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2.0k
views
Comment: C: snpEff for bacteria genome
6.4 years ago by finswimmer 16k
4
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0
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5.0k
views
Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
6.4 years ago by finswimmer 16k
1,610 results • Page 4 of 33
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