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Answer: Answer: Convert all fasta files in one folder
2.8 years ago by finswimmer 16k
1
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0
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929
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Answer: Answer: How to extract reads which contain specific sequence from pair-end fastq files
2.9 years ago by finswimmer 16k
3
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0
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1.5k
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Answer: Answer: Use bcftools to find carriers of variants
2.9 years ago by finswimmer 16k
1
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0
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1.5k
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Answer: Answer: Both bcftools norm and vt normalization failing for the same variant?
3.0 years ago by finswimmer 16k
2
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2
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2.9k
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Answer: Answer: Excluding variants with a "LowQual" filter in bcftools consensus
3.8 years ago by finswimmer 16k
1
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0
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2.9k
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Answer: A: bcftools missing most indels in variant calling
4.1 years ago by finswimmer 16k
3
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0
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5.6k
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Answer: C: Sanger sequencing Result: Difference between forward and reverse DNA strands
4.1 years ago by finswimmer 16k
0
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0
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2.0k
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Answer: A: Freebayes - not detecting some ALT alleles
4.1 years ago by finswimmer 16k
3
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0
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4.3k
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Answer: C: Best ubuntu version for bioinformatics?
4.1 years ago by finswimmer 16k
1
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1
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2.8k
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Answer: A: I have more reads after extracting those that are mapped...
4.2 years ago by finswimmer 16k
1
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1
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1.7k
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Answer: A: gnoMAD specific mutation allele position in gnoMAD
4.7 years ago by finswimmer 16k
1
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1
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1.9k
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Answer: A: Why Samtools view don't extract sequence out of the given region?
4.8 years ago by finswimmer 16k
0
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0
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2.4k
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Answer: A: Soft filtering of SNPs in a list
4.8 years ago by finswimmer 16k
1
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0
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5.6k
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Answer: A: Alternative Depth (AD) field in VCF created with samtools mpileup and bcftools c
4.9 years ago by finswimmer 16k
2
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1
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3.0k
views
Answer: A: sed (or similar) command to remove part of the FORMAT from a vcf file?
4.9 years ago by finswimmer 16k
3
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1
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3.3k
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Answer: C: bcftools DP filtering and recode as vcftools, but for polyploids?
4.9 years ago by finswimmer 16k
2
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0
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5.9k
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Answer: A: Changing Sample Names in Merged VCF file
5.0 years ago by finswimmer 16k
0
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1
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9.0k
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Answer: C: how to remove duplicate SNP rows in vcf using bcftools norm
5.0 years ago by finswimmer 16k
2
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0
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1.4k
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Answer: A: What does "hfs" or "efs" stand for in amino acid changes?
5.1 years ago by finswimmer 16k
1
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0
replies
1.3k
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Answer: A: How to FLAG low quality SNPs in samtools VCF
5.1 years ago by finswimmer 16k
1
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0
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2.3k
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Answer: A: Extract N amino acids from fasta file
5.1 years ago by finswimmer 16k
7
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3
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6.9k
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Answer: C: sorting a multi-sample (genotype) vcf file
5.2 years ago by finswimmer 16k
2
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1
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1.7k
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Answer: A: Does BQSR remove duplicate sequence in library?
5.2 years ago by finswimmer 16k
5
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1
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3.4k
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Answer: A: merge multiple files by commom column names
5.2 years ago by finswimmer 16k
5
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1
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6.3k
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Answer: A: Extract columns from VCF file using bcftools preserving all the header info
5.2 years ago by finswimmer 16k
2
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0
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2.1k
views
Answer: Answer: How to turn off Quality score binning in bcl2fastq
5.2 years ago by finswimmer 16k
3
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0
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942
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Answer: A: Differences in HGVS notation
5.2 years ago by finswimmer 16k
2
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0
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984
views
Answer: A: Entrez loop errors
5.3 years ago by finswimmer 16k
0
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0
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9.0k
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Answer: A: Python FASTA scripting
5.3 years ago by finswimmer 16k
1
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0
replies
1.2k
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Answer: A: Generating consensus sequence from bam file
5.4 years ago by finswimmer 16k
2
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0
replies
1.2k
views
Answer: A: 1000 Human Genomes Project Population Alignment Data
5.4 years ago by finswimmer 16k
1
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1
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1.0k
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Answer: C: bcftools merge heterozygous calls
5.4 years ago by finswimmer 16k
1
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0
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1.2k
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Answer: A: Manifest and off target
5.4 years ago by finswimmer 16k
4
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1
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4.5k
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Answer: A: Consensus reads from UMIs
5.5 years ago by finswimmer 16k
1
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0
replies
1.3k
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Answer: A: How to remove all characters after a specific pattern?
5.5 years ago by finswimmer 16k
3
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1
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4.3k
views
Answer: A: Remove line with awk in vcf.gz
5.5 years ago by finswimmer 16k
1
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1
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1.8k
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Answer: A: skipping column names using awk
5.5 years ago by finswimmer 16k
4
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1
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29k
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Answer: A: Creating workflows with snakemake and conda
5.5 years ago by finswimmer 16k
0
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0
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1.1k
views
Answer: A: Compare results of test pipelines with the ones from GIAB
5.5 years ago by finswimmer 16k
3
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1
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32k
views
Answer: A: bcftools-merge for vcf files
5.5 years ago by finswimmer 16k
0
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1
reply
2.4k
views
Answer: A: Amount of variants increased after bedtools subtract
5.5 years ago by finswimmer 16k
4
votes
0
replies
15k
views
Answer: C: Error : Could not build fai index
5.5 years ago by finswimmer 16k
4
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1
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1.9k
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Answer: A: Bridge Amplification error rate and duplicates in NGS
5.5 years ago by finswimmer 16k
1
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0
replies
4.1k
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Answer: A: cut the sequence from fasta file
5.5 years ago by finswimmer 16k
0
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0
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1.9k
views
Answer: A: parsing gbk file to get fna file
5.5 years ago by finswimmer 16k
2
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1
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2.0k
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Answer: A: How to remove duplicate fasta sequences from a file
5.5 years ago by finswimmer 16k
2
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1
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1.7k
views
Answer: C: User error while using GATK SplitNcigarReads
5.5 years ago by finswimmer 16k
4
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1
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2.1k
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Answer: C: Samtools mplileup detects wrong INDEL positions
5.5 years ago by finswimmer 16k
2
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1
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1.4k
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Answer: C: unknown genotype in a vcf file
5.5 years ago by finswimmer 16k
3
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0
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2.5k
views
Answer: A: Column explanation for repeat database from UCSC
5.6 years ago by finswimmer 16k
417 results • Page 1 of 9
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