User: xzpgocxx

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xzpgocxx0
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Posts by xzpgocxx

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Comment: C: How to calculate the different expression gene used PacBio full-length cDNA seq
... Thanks, It's really the best guide to solve this question. Let me try. ...
written 12 weeks ago by xzpgocxx0
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Comment: C: BLESS : ERROR: Irregular quality score range 35-75
... bless -read1 3k_R1.rd.clean.fastq -read2 3k_R2.rd.clean.fastq -prefix ../bless/3k_R12.rd.clean -kmerlength 31 ...
written 4 months ago by xzpgocxx0
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Comment: C: BLESS : ERROR: Irregular quality score range 35-75
... Yes, command-line, VERSION: 1.02 ...
written 4 months ago by xzpgocxx0
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BLESS : ERROR: Irregular quality score range 35-75
... I get follows error output when used the [bless][1] to correct my Illumina paired-end reads, which I have trimmed used Trimmomatic software. Checking input read files ERROR: Irregular quality score range 35-75 -------------------------------------------------------------------------- ...
software error next-gen written 4 months ago by xzpgocxx0
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How to calculate the different expression gene used PacBio full-length cDNA sequencing and Illumina sequencing?
... Now, I have some data from PacBio full-length cDNA sequencing and Illumina sequencing. And I want to calculate the gene expression leave (FPKM). There is no available genome for my species. I can do it used Trinity if only have Illumina data, but now I don't know how to do it when adding PacBio fu ...
rna-seq written 6 months ago by xzpgocxx0 • updated 12 weeks ago by tjduncan100
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Comment: C: How to create your own association file for gene ontology enrichment analysis ?
... Hello, I also want to do the same work. So, how to resolve this problem of you? ...
written 9 months ago by xzpgocxx0
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Comment: C: How to get the gene function based on GO id?
... Yes, Just like : 1. Biological Process alcohol metabolic process monosaccharide metabolic process amine metabolic process carbohydrate metabolic process metabolic process chitin metabolic process amino sugar metabolic process glucosamine metabolic process N-acetylglucosamin ...
written 10 months ago by xzpgocxx0
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How to get the gene function based on GO id?
... Hello, I have an annotation file that includes two columns: gene_name and GO_id. How to get the gene function in ***different level*** based on the GO id? gene_name GO_id Unigene60407_cheng_ma_9.6A GO:0005626,GO:0042995,GO:0005790 Unigene52761_cheng_m ...
gene sequence written 10 months ago by xzpgocxx0 • updated 10 months ago by EagleEye4.9k

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