User: Ben

gravatar for Ben
Ben50
Reputation:
50
Status:
Trusted
Location:
Last seen:
1 day, 13 hours ago
Joined:
9 months ago
Email:
h*******@mail.kiz.ac.cn

Posts by Ben

<prev • 47 results • page 1 of 5 • next >
0
votes
1
answer
179
views
1
answers
Answer: A: Prediction of lncRNA cis regulation
... you can see my paper titled "Functional prediction of differentially expressed lncRNAs in HSV-1 infected human foreskin fibroblasts" ...
written 23 days ago by Ben50
0
votes
1
answer
815
views
1
answers
Comment: C: THOR a HMM based approach for differential peak calling with replicates
... Could you explain the THOR in detail? ...
written 9 weeks ago by Ben50
0
votes
0
answers
212
views
0
answers
Comment: C: how to calculate p value
... I need to calculate the difference of two ChIP-seq, not one ChIP-seq and input ...
written 11 weeks ago by Ben50
0
votes
0
answers
212
views
0
answers
how to calculate p value
... I have two ChIP-seq data, including Case and Control sample. The reads in ChIP-seq followed Poisson distribution, so how to calculate the difference and p value in peaks identified in ChIP-seq. ...
R chip-seq rna-seq written 11 weeks ago by Ben50
3
votes
2
answers
367
views
2
answers
extract the number of reads around TSS
... I have coded oen python script to extract the amount of reads around TSS from ChIP-seq sam file, but the speed is too slow. Does anyone have any suggestions to solve this question? Thanks in advance! ...
chip-seq written 4 months ago by Ben50 • updated 4 months ago by Alex Reynolds21k
0
votes
1
answer
834
views
1
answers
Comment: C: lncRNA target identification
... I think that you obtained the sequences should be the probe, not the lncRNAs. If you want to get the full-length sequece of lncRNAs, you can download them from some database, such as NCBI, UCSC. You want to find the interaction between lncRNAs and mRNAs, you can calculate the pearson correlation of ...
written 4 months ago by Ben50
0
votes
0
answers
309
views
0
answers
Comment: C: lncRNA machine learning
... I have some differentially expressed genes, including mRNAs and lncRNAs. I want to use machien learning to predict the function of lncRNAs ...
written 4 months ago by Ben50
0
votes
0
answers
309
views
0
answers
lncRNA machine learning
... I want to use one of machine learning algorithm to predict the function of lncRNAs, Does anyone have any suggestions? Thanks in advance!! ...
rna-seq written 5 months ago by Ben50
0
votes
2
answers
294
views
2
answers
Comment: C: Gene Ontology Analysis
... Did not you obtain any GO terms? if so, you cany try other tools, such DAVID, goprofile. ...
written 5 months ago by Ben50
1
vote
1
answer
355
views
1
answers
Comment: C: Combining RNA-Seq and ChIP-Seq
... About the first question, you need to do qRT-PCR and ChIP-qPCR to validate the results you analyzed. Second question, you need to annotate the peaks, then you can obtain a Venn diagram. ...
written 5 months ago by Ben50

Latest awards to Ben

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 996 users visited in the last hour