User: Chaimaa

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Chaimaa180
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Posts by Chaimaa

<prev • 199 results • page 1 of 20 • next >
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Comment: C: how to define new discovered genes from list of genes?
... got it @genomax, Thanks a lot! ...
written 3 days ago by Chaimaa180
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Comment: C: how to define new discovered genes from list of genes?
... any other help please? ...
written 5 days ago by Chaimaa180
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Comment: C: how to define new discovered genes from list of genes?
... @genomax hi genomax, can you give me more details please, experimental methods like what ? !, no i didnt apply **blast** how it can be applied in this issue it can be? ...
written 6 days ago by Chaimaa180
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how to define new discovered genes from list of genes?
... hello guys, If i define a list of genes by applying some machine learning or any regularization methods, if we say i get 200 genes. From those 200 genes, i find 50 genes existed in the literature, or even by applying cross validation and define that those genes are significant, what about the othe ...
genome genes machine learning new genes written 7 days ago by Chaimaa180
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Comment: C: is GDC portal have COLORECTAL (COADREAD) cancer ?
... @Kevin, Thanks a lot for your great help and valuable comments. ...
written 7 weeks ago by Chaimaa180
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Comment: C: is GDC portal have COLORECTAL (COADREAD) cancer ?
... @Hi Kevin, Thanks a lot! and i would like to share my progress here. For CNV, the specific files could be level-4 non-discretized gene-level focal alterations computed by GISTIC2.0 or "all_data_by_genes.txt" table from GISTIC 2.0, These 2 files can be easily obtained from [here][1]. But for gene e ...
written 7 weeks ago by Chaimaa180
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Comment: C: is GDC portal have COLORECTAL (COADREAD) cancer ?
... Great Thanks! @Kevin, very grateful for your usual help!. Yes i want to do the analysis from an integrative view (gene expression, DNA methylation and somatic copy number alteration (CNV)) if the sample size was reasonable. However, i yet don't know how to deal with GDC portal tcga data and even h ...
written 9 weeks ago by Chaimaa180
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Comment: C: Drug resistant vs. Drug sensitive data retreival from TCGA
... @fawazfebin, hi dear, i'm confused, do you mean the informations in this column "new_ tumor_ event_ after_ initial_ treatment or the one which have "WITH TUMOR" and "TUMOR FREE" as shown in the below figure? and after you group them into those 2 groups, how you label them for further analysis as 0 a ...
written 9 weeks ago by Chaimaa180
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Comment: C: is GDC portal have COLORECTAL (COADREAD) cancer ?
... ![Descriptive picture][1] [1]: https://i.postimg.cc/k4dsC45H/photo1.png ...
written 9 weeks ago by Chaimaa180
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Comment: C: is GDC portal have COLORECTAL (COADREAD) cancer ?
... Hi @kevin, so happy to see you too, and I'm very thankful for the valuable information you provide here it really gives me always insightful biological knowledge. [Here][1] is the configured search i adopt to get for example COADREAD drug response data. However, i got 2 separate txt files, one is f ...
written 9 weeks ago by Chaimaa180

Latest awards to Chaimaa

Great Question 5 months ago, created a question with more than 5,000 views. For How to extract the list of genes from TCGA CNV data
Popular Question 14 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
Popular Question 14 months ago, created a question with more than 1,000 views. For how to link list of genes using PPI networks?
Popular Question 14 months ago, created a question with more than 1,000 views. For What's the interpretation behind Pathway enrichment analysis
Popular Question 18 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
Voter 18 months ago, voted more than 100 times.
Centurion 19 months ago, created 100 posts.
Popular Question 20 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
Popular Question 24 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
Popular Question 2.9 years ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
Supporter 2.9 years ago, voted at least 25 times.
Rising Star 2.9 years ago, created 50 posts within first three months of joining.

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