User: aouichechaimaa

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Posts by aouichechaimaa

<prev • 59 results • page 1 of 6 • next >
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Comment: C: How to draw many graphs in one graph in Cytoscape with different colors ?
... PLZ could anyone help ? ...
written 3 months ago by aouichechaimaa90
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Comment: C: How to draw many graphs in one graph in Cytoscape with different colors ?
... Jean-Karim Heriche, could you please give me more details or attached file? I have to add the label in the same file of my sub networks or what? I have 10 subnetworks. ...
written 3 months ago by aouichechaimaa90
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How to draw many graphs in one graph in Cytoscape with different colors ?
... Dear all, I have around 10 subgraphs, my goal is to draw those graphs in one graph in Cytoscape by using 10 colors for further analysis! I search in google but found nothing helpful! So plz if anyone has an idea about how to draw them using different colors? any links or pdf or ... Thanks in a ...
colors cytoscape graph written 3 months ago by aouichechaimaa90 • updated 3 months ago by Jean-Karim Heriche13k
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Comment: C: What's the interpretation behind Pathway enrichment analysis
... @Santosh Anand, this is exactly what i want to understand. the most set of genes of those 6 subnetworks are sharing some common pathways like Wnt signaling pathway, colorectal cancer, and some other pathways. and so, i want to interpret this findings. ...
written 3 months ago by aouichechaimaa90
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What's the interpretation behind Pathway enrichment analysis
... Dear all, I have around 6 sub-networks and their pathway enrichment analysis obtained by DAVID KEGG pathway. I want to understand the exact meaning behind their pathways analysis beside the biological interpretation. In short, what can i conclude from those pathways? ![https://ibb.co/gb9nfF][1] ...
pathway enrichment analysis gene networks written 3 months ago by aouichechaimaa90 • updated 5 weeks ago by Biostar ♦♦ 20
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Comment: C: why spectral clustering show a warning?
... @Jean-Karim Heriche, how could i avoid this warning now?? No, i don't have self-loops in my graph ...
written 3 months ago by aouichechaimaa90
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Comment: C: why spectral clustering show a warning?
... @ Rodrigo, So how could i avoid this warning now? yes I'm using the spectral code on Python by sklearn ...
written 3 months ago by aouichechaimaa90
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Comment: C: why spectral clustering show a warning?
... @ Jean-Karim Heriche, I extracted the connected components from my graph, then i run spectral code on each component but again get the same warning? why!!!! ...
written 3 months ago by aouichechaimaa90
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Comment: C: why spectral clustering show a warning?
... So @Jean-Karim Heriche How to avoid this warning? I have read the tutorial which you share with me. I applied Normalized spectral clustering according to Ng, Jordan, and Weiss (2002) and I used the quality measure of calinski_harabaz but still getting that warning! what's wrong !!! ...
written 3 months ago by aouichechaimaa90
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Comment: C: why spectral clustering show a warning?
... @Jean-Karim Heriche, So, I have to retrieve the connected components first? I was thinking because my input is a symmetric adjacency matrix that's why this warning was shown; As I know spectral work with affinity matrix; but, honestly i have no idea in how to translate an adjacency matrix into affin ...
written 3 months ago by aouichechaimaa90

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