User: aouichechaimaa

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Posts by aouichechaimaa

<prev • 84 results • page 1 of 9 • next >
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Comment: C: How to extract the list of genes from TCGA CNV data
... @ Kevin Blighe ,Thanks a lot Bro. Yes definitely i will cite your recent publication in my manuscript and Plz if you have any other publications share with me via e-mail or link. Your topic is of great interest for me . go ahead...... ...
written 12 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... I have a size issue actually. ...
written 13 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @Kevin Blighe i'm very thankful and happy for the great help you gave me! Plz can you also do the annotation Step for me I tried in my computer but it show me this error df_ann <- cbind(df[subjectHits(hits),],genes[queryHits(hits),]) Error: cannot allocate vector of size 124.9 Mb ...
written 13 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... OK Bro i can wait . ...
written 15 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @Kevin Blighe well done Bro! But when i only downloaded the FFPE file like you and so my question is why do you use FFPE and not "genome_wide_snp_6-segmented_scna_minus_germline_cnv_hg19"? Can you plz answer my last question and i really really appreciated your help. BEST WISHES. ...
written 16 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @ Kevin Blighe, Hi Bro i know that i disturb you a lot I apologize for that and i really really appreciate your help! Did y check your code with my data, i really need to do this job so pls give help me out. ...
written 17 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @ Kevin Blighe ok the cancer Data which i'm working on is the prostate adenocarcinoma (PRAD). ...
written 18 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @ Kevin Blighe Bro, i have fixed the first error. Now, these 2 parts are not working cnv_obj <- load_cnv(cnvMatrix, markers_obj, n) Loading Copy Number Data Error in matrix(0, length(samples), ncol(markers_list[[chromosomes[i]]])) : non-numeric matrix extent resul ...
written 18 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @ Kevin Blighe I do every step and run it carefully, i can see the output variables in the Global environment of R right corner. Can i share my data with you and you can test your code on it? My OS is windows10 and RAM is 12GB and my data size is 6.87 MB. ...
written 19 days ago by aouichechaimaa100
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Comment: C: How to extract the list of genes from TCGA CNV data
... @Kevin Blighe Yes Bro I'm following your steps one by one and by the correct order. ...
written 19 days ago by aouichechaimaa100

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Popular Question 10 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
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