User: Chaimaa

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Chaimaa150
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Posts by Chaimaa

<prev • 165 results • page 1 of 17 • next >
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... @Kevin Blighe Hi, Kevin No the 2 threads are not linked bcz, I built the PIN based on just the overlapped genes and not the coexpression. I tried to text you on GitHub and i can't!? ...
written 5 months ago by Chaimaa150
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... @Kevin Blighe Ok, Kevin Thanks! No problem I will try my best to understand how they do that. many thanks for you again! ...
written 5 months ago by Chaimaa150
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... I already read the manuscript , and I just want to show you from where i got the idea of dysregulated pathways Sorry! ...
written 5 months ago by Chaimaa150
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Comment: C: How to calculate the Pearson correlation coefficients between a list of genes?
... I want to keep the PCC values larger than 0.5 or smaller than -0.5? Which command do i use in R? ...
written 5 months ago by Chaimaa150
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... Kevin, you can have a look at this paper, published in 2018 ...
written 5 months ago by Chaimaa150
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Comment: C: How to calculate the Pearson correlation coefficients between a list of genes?
... @Kevin Blighe Hi, Kevin I already have the samples too, list of 300 genes and many samples Can I apply the same code? I want the output like edges list `gene1 gene2 PCC value between them` ...
written 5 months ago by Chaimaa150
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... Ok, Kevin, The data i have is a file with 3 columns `path1 path2 score` The paper i read is this one: https://www.ias.ac.in/article/fulltext/jgen/097/01/0173-0178 ...
written 5 months ago by Chaimaa150
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How to calculate the Pearson correlation coefficients between a list of genes?
... Hello guys, I have **a list of around 300 genes** and, I want to calculate **gene co-expression value via the Pearson correlation coefficient (PCC)** between these genes and return only the ones have larger than or less than 0.5. Any code available for this, plz share? Appreciate any help plz!! ...
pcc genes list written 5 months ago by Chaimaa150 • updated 5 months ago by Kevin Blighe43k
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Comment: C: How to identify dysregulated pathways using Support Vector machine (SVM)?
... Yes, Kevin, i did that ...
written 5 months ago by Chaimaa150
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How to identify dysregulated pathways using Support Vector machine (SVM)?
... Hello guys, Does anyone have an idea about how can we identify dysregulated pathways from a pathway network using SVM What kind of inputs do we need for SVM in this case? IF anyone can just suggest me?, appreciate that! ...
svm written 5 months ago by Chaimaa150

Latest awards to Chaimaa

Popular Question 6 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
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Centurion 8 months ago, created 100 posts.
Popular Question 9 months ago, created a question with more than 1,000 views. For What's Pathway Enrichment Analysis?
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