User: spider_monkey

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Population genetics enthusiast

Posts by spider_monkey

<prev • 5 results • page 1 of 1 • next >
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vcftools counts output not written to file
... I am trying to write a counts file using vcftools. Whether the output file is actually written depends on the prefix that I supply in the --out option. The .log file, however, does get written. Below I am pasting the contents of two log files written after my command. They only differ in the name of ...
vcf frequency vcftools snp counts written 10 days ago by spider_monkey10
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vcftools - how to interpret .frq.count files?
... I used vcftools to get counts of alleles (using --counts) and the output was written to a .frq.count file. The header column and first few lines of this file are as follows: CHROM || POS || N_ALLELES || N_CHR || {ALLELE:COUNT} 1 || 232603151 || 2 || 44 || ...
allele frequency allele count vcftools written 2.1 years ago by spider_monkey10
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Comment: C: vcftools installation: vcftools/bin folder not created
... Thank you, I understand now! I chose to install it in my vcftools directory and I also entered 'make install' instead of 'sudo make install' like I originally did. Now there is a bin folder containing executables within my vcftools directory. Thanks again! ...
written 2.2 years ago by spider_monkey10
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vcftools installation: vcftools/bin folder not created
... I am attempting to install vcftools on my macOS Sierra (version 10.12.3). I am using the installation instructions from github as follows (from https://github.com/vcftools/vcftools): git clone https://github.com/vcftools/vcftools.git cd vcftools ./autogen.sh ./configure make sudo mak ...
vcf installation make vcftools configure written 2.2 years ago by spider_monkey10 • updated 2.2 years ago by Pierre Lindenbaum120k
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Individual IDs in .vcf format are not the same as in the original plink format that I converted to .vcf using plink/seq
... I converted from plink file format to vcf file format using plinkseq by following instructions of the first response to [this post][1]. The individual IDs in plink format (found in .ind or .pedind file) are crucial for my work, and I am concerned that they did not convert properly for me to use in ...
vcf plink/seq .bed plink convert file format written 2.2 years ago by spider_monkey10

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Popular Question 2.1 years ago, created a question with more than 1,000 views. For vcftools installation: vcftools/bin folder not created

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